Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00945 ATGATCGTTGGAAACTTTGTGCGTTTTGAAAGTAGCTTGAGCAATTGCATTGTGGCCTATTATAACATTTTGTCAAGATTCTTTGCAGCGAAGAGGAAGTGGTTGCAGCGTTGGATCGCATACCCTGCTTTGTCCAGAGTCCACCCCAAAGGTGACACCTTTACAGTGTCTTACCTCGTCAACTCATGTGGGGTGTCCCCAACAGAGGCTAAGGAACTTTCCAAAAGGGTCAATTTGAAAACCCCAGATGGCCCAAATGCTGTTCTTGATCTTCTCAGCAACTATGGGTTCTCCAAGACCCAGATTGCAAAACTTGTGGAAAAGCGTCCCTTGTTGCTTGTTGCAAAGGCACAAAATACCCTTTTGCCTAAACTCAAGTTCTTGAGATCTATTGGGGTTTCCATTACTGATCTTCCCAAGATTCTGCTTCGAAACCATGTTATATTGACGTGTAGCTTGGAAAATTTCCTCATTCCACGTTATGAGATCCTCCGGGGTATAGTTCAGGATGATCAGAAAGTTGTTAGAATTTTGAAAAGTGCTGCATATACTATTACATATTCTGACATGTTGAAAACCTTGGTTCCAAACATTAATGTTTTGAGGCAATCTAGAGTGCCTCAGGCTTCCATCTCTCTCTTGATGGTCTGTTTTCCTTGTACAGCACATATGAAGCATTCCAAATTTTTGGAAGCTCTCAAGACAGCAAGGGGAATTGGGTTTGATCCATTGAAAACAAATTTAATACATGCTCTCGGTGTGCTTTTAAATACTAACAAAACAATGAAGGATTCAAAGTTTAAGGTTTATGTTAACAATAAGGAAGGATGCACTGATTTAGAGGACAGACTGCCTCCTAAGAAAGGAACAAGAGGAAAATGA 882 0.4082 MIVGNFVRFESSLSNCIVAYYNILSRFFAAKRKWLQRWIAYPALSRVHPKGDTFTVSYLVNSCGVSPTEAKELSKRVNLKTPDGPNAVLDLLSNYGFSKTQIAKLVEKRPLLLVAKAQNTLLPKLKFLRSIGVSITDLPKILLRNHVILTCSLENFLIPRYEILRGIVQDDQKVVRILKSAAYTITYSDMLKTLVPNINVLRQSRVPQASISLLMVCFPCTAHMKHSKFLEALKTARGIGFDPLKTNLIHALGVLLNTNKTMKDSKFKVYVNNKEGCTDLEDRLPPKKGTRGK 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00945 293 Pfam mTERF 89 268 IPR003690 GO:0003690|GO:0006355
Cca09g00945 293 Gene3D Transcription termination factor 3, mitochondrial 52 190 IPR038538 -
Cca09g00945 293 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 35 270 - -
Cca09g00945 293 PANTHER CGI-12 PROTEIN-RELATED 35 270 IPR003690 GO:0003690|GO:0006355
Cca09g00945 293 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Cca09g00945 293 SMART mt_12 175 207 IPR003690 GO:0003690|GO:0006355
Cca09g00945 293 SMART mt_12 139 170 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00945 Cca-Chr9 28062428 28063542 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca09g00945 mTERF 2.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00945 K15032 - gmx:100788793 304.293