Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00944 atgccatttaccgttgtGGCGCCGCCATACTCAAAATGGTGGACCCCCGCCATTTTCAGCCCCAACGACCATAACGGATCGCAGCGGCCGCCGCCCTACCGTTATGGCGCCGCCATTGCGCTGCCATCCCCGCCATTTGACAACACTGCGTTTCAACTTTCAACCGAAGAGGAAGTGGTTGCAGCGTTGAATCGCATACCCTGTTATGGTGTGGAGCATCAAATATCACTTGTTCCTAACACAAACTTCTTGAGATTAATTGCATCATCATTAACACGCTACAAGAGCACCCATTTCCTATTGGGTTCACATTCTCTGCTGCAACACAAACACAATGCTTCACTTTTTCTCTTCAATTCATTCACTTCTGGTGCAATCCACCCCAAAGGTGACACCTTTACAGTGTCTTACTTGGTCAACTCATGTGGGGTGTCCCCAACACTGGCCAAGGAACTCTCCAAAAGGGTCAATTTGAAAACCCCAGATGGCCCAAATGCTGTTATTGATCTTCTCAGCAACTATGGGTTCTCCAAAACCCAGATTGCAAAACTTGTGGAAAAGCATCCCTTGGTGCTTGTTGCAAAGGCAGAAAATACCCTTTTGCCTAAACTCAAGTTCTTGAGATCTATTGGGGTTTCCAATACTGATCTTCCTAAGATTCTGCTTCGAAACCATGCTATATTGATGTGTAGCTTGGAAAATTTCCTCATCCCACGTTATGATATCCTCCGGGGTATAGTTCAGGATGATCAGAAAGTTGTTAGAACTTTGAAAAGTGCTGCAAATAGTATTATATATTCTGACGTGTTGAAAACCTTGGTTCCAAACATTAATGTTTTGAGGCAATCTAGTGTGCCTCAGGCTTCCATCTCTCTCTTGATGGTCCATTTTCCTTGTACAGCATATATGAAGCATTCCAAATTTTTGGAAGCTCTCAAGACAGCAAGGGGAATTGGGTTTGATCCATTGAAAAGAAATTTAATATATGCTCTCGTTGTGCTTTTAAATACTAACAAAACAATGCAGGATTCAAAGTTTAAGGTTTATGAGAGGTGGGGTTGGAACCACAAATTGGCTCTTCAAGCATTTAGGAAGTTTCCCGTTTTTATGATGTTGTCAAAGGAGACATATTAA 1134 0.4224 MPFTVVAPPYSKWWTPAIFSPNDHNGSQRPPPYRYGAAIALPSPPFDNTAFQLSTEEEVVAALNRIPCYGVEHQISLVPNTNFLRLIASSLTRYKSTHFLLGSHSLLQHKHNASLFLFNSFTSGAIHPKGDTFTVSYLVNSCGVSPTLAKELSKRVNLKTPDGPNAVIDLLSNYGFSKTQIAKLVEKHPLVLVAKAENTLLPKLKFLRSIGVSNTDLPKILLRNHAILMCSLENFLIPRYDILRGIVQDDQKVVRTLKSAANSIIYSDVLKTLVPNINVLRQSSVPQASISLLMVHFPCTAYMKHSKFLEALKTARGIGFDPLKRNLIYALVVLLNTNKTMQDSKFKVYERWGWNHKLALQAFRKFPVFMMLSKETY 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00944 377 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 108 375 - -
Cca09g00944 377 Gene3D Transcription termination factor 3, mitochondrial 137 268 IPR038538 -
Cca09g00944 377 SMART mt_12 182 213 IPR003690 GO:0003690|GO:0006355
Cca09g00944 377 SMART mt_12 218 249 IPR003690 GO:0003690|GO:0006355
Cca09g00944 377 PANTHER CGI-12 PROTEIN-RELATED 108 375 IPR003690 GO:0003690|GO:0006355
Cca09g00944 377 Pfam mTERF 168 375 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00944 Cca-Chr9 28019553 28026194 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca09g00944 mTERF 3.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00944 K15032 - gmx:100788793 387.882