Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00940 ATGCTGCTTTCATATATTAGATGCAAAACAAGTCTTATTTATATATATTCTTCCATTAAGCTTCTCTTGCTGTTGCTGCTGCACATCGTGAAGGTGAAGAAAATGAAGAATTCAAAGAAAACGGGTGTACGGAAGTACCACAAATCGGATAATCCACGCTTGCGGTGGACACCTGAACTCCATGAATACTTTGTTGAAGTTGTGGAAGGTCTAGGTGGAAAAAACAAGGCAACACCAAAGAGCATTCTGCAGATGATGCATGTGAAAGGACTGAGGATCTCTCACATTAAAAGCCATCTTCAGATGTACAGGAACATTAAGGGACATTCGATTCTCACATCAATGCATCAGGAGATGGAAGGAAATGAACATGTTAACGATATCCCAATGTGCTCCAATTGTTCATCTCAAAGATCACAAGAAAATAAAGTAAGAGCATCAAAATATGATACGGGGATCAATCAAGAAATTTATCCGTTAGACAATAAAGGATTTTCGCAGACCAGTGAAACTGATTACGATCTAAATCAGGAACCTGAATCAAGTGCATTACTTAGTGATACGTCAAATGAAGAAAATTGTAGGACAATGAAATTTCTTGATCTCTCATTCTCTTTTAGCTCTCCTCTAATTCCAACGATGCAAAATGAGCGAGAGAGGATGCGTTTTTCTCCACCAAATACAGCTGATAATCATGTCGTTGATTCTAATTCTGTACAATCTCATGGGAGCAATTATATAAATTTAAACCTTACAATATGA 762 0.3727 MLLSYIRCKTSLIYIYSSIKLLLLLLLHIVKVKKMKNSKKTGVRKYHKSDNPRLRWTPELHEYFVEVVEGLGGKNKATPKSILQMMHVKGLRISHIKSHLQMYRNIKGHSILTSMHQEMEGNEHVNDIPMCSNCSSQRSQENKVRASKYDTGINQEIYPLDNKGFSQTSETDYDLNQEPESSALLSDTSNEENCRTMKFLDLSFSFSSPLIPTMQNERERMRFSPPNTADNHVVDSNSVQSHGSNYINLNLTI 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00940 253 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 42 169 IPR044848 GO:0003700
Cca09g00940 253 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 42 169 - -
Cca09g00940 253 Gene3D - 51 107 - -
Cca09g00940 253 Pfam Myb-like DNA-binding domain 54 104 IPR001005 -
Cca09g00940 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 108 IPR017930 -
Cca09g00940 253 SUPERFAMILY Homeodomain-like 50 105 IPR009057 -
Cca09g00940 253 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 51 106 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00940 Cca-Chr9 27936144 27940983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00940 42 104 G2-like Transcription Factor Family AT1G14600 68.254 3.33e-23 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca09g00940 Myb_DNA-binding 3.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00940 - - ccaj:109790621 468.774