Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00923 ATGAACAACAGTGTTCCTGATTGGAATTTTGGGAGTGATTCCTGTGTCACCACCACCAATCAAAAGAAGGCCATGGGGGTGGACCAAGAACTTGTAGAGCTCCTATGGCAAAATGGCCAGGTTGTGTTGCACAGCCAAACACATAGAAAACCGGTTGTGAATTCGTTCGCACCGAGGCCAGTTCTGAAAAACTTTCAATCAAGGACTAGTGAGCCGTTTGGGAACTCAAGTAACTTGATTCAAGATGATGAGACGGTCTCATGGATCCAATACCCTCTCGAGGATACATTGGAACAAGAATTCTGTTCAAACCTTTTATCTGAACTGCCACACTGTGAAGTTGAGTCCTATAAGCAAATCAAGCCATTTGAAGAGGGAAAGTTTACCAAATTGGATGCCTCTAGTGCCCCCCATGTGACTGTAAGTTCACAATCACCTACTATGAAATCTTCCCCTTTTCAGGAATTCTCAGGAATTCCTATACCTGCTCCAAGATTCCATGTTTCTGATTCACCTCAGAAAAACAATAATGACTTGGGTGGATCATGTAAGGTCCAAAACTTCTCTCACTTTTCAGCACCCCTTAATGTTTCTTCAGCGTCGCCTAATGCACATTTTAGAGACAAAATTACTGGTAGCATGTCAAAAAATGAGATCAGAGAGGGCTCATTGATGACAATTGGTTCAAGTTACTGTGGTAGCAATCACATCCCCCAAGATCCAGATGCAAGCAGGGCATCAAGCAACGGTATTTGGACTGCTACTTTATCGGTTGAGCCTGAAGCTGATAGAGATGATGTGCCGAGAACAATTCCTCAGAGTGAGAAAGGGAAATCAGAGATGCTTGAACCAACTACGACGTCTTCTTCTGGTGGATCAGGTAGTAGTCTTGGAAAAACTTGTTCCTTATCCACCAGAAACCAGGGCCAAAAGAGAAAAGGAGTGGATGTGGAAGAATCTGAGGATCAAAGTGAGGAAACTGAACTTAAATCAGCAACTGGAAACAAGGCATCTCAACGGGCAGGTTCGGCTAGAAGGAACCGTGCTGCTGAAGTGCACAATCTGTCAGAAAGGAGAAGGAGAGATAGGATCAATGAGAAGATGAAGGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGCTGGAAGAGGCAATTGAATACTTGAAATCACTTCAGTTACAACTTCAGCTAATGTGGATGGGATCTGGCATGGCACCAATGATGTTTCCAGGAATTCAGCACTATATGTCACAAATGGGTATGGGAATGGCTACACCTCCTTTCCCTCCAGCTATTCACAATTCAATGCAATTACCGCGAGTGCCGCTTGATCAGTCTGTGTCTGCATCTCAGACACCAAACCAGACATTAATGTGCCAAAATCCTATTCTAGGAGCCTTCAATTACCAAAATCAGATGCAAAATCCAGCTCTATCAGAGCAATATGCGCGTTTCATGAGCTATCACCTTATGCAAAATGCCTCTCAGCCAATGAATGTATTCAGATATGGTCCCCAGGCAGTACAACATAGTCAAACAATGATTACACCCGGCAATAGCAGTGGAAACATGAGTGGAGCAGCTAATATTGATGAGGCTGTGAGTGGCAAAATGGGTAAGCCACTTACATTCTTCTCCTTGCTTTGGCTAACAACAAAATCAGGATACCACATCAGTTATATGAAGTTGCACCTTTTGCCTGTTCCCGTTGGTAAACAGGTGGTGACAAACAGATGCTAA 1758 0.4363 MNNSVPDWNFGSDSCVTTTNQKKAMGVDQELVELLWQNGQVVLHSQTHRKPVVNSFAPRPVLKNFQSRTSEPFGNSSNLIQDDETVSWIQYPLEDTLEQEFCSNLLSELPHCEVESYKQIKPFEEGKFTKLDASSAPHVTVSSQSPTMKSSPFQEFSGIPIPAPRFHVSDSPQKNNNDLGGSCKVQNFSHFSAPLNVSSASPNAHFRDKITGSMSKNEIREGSLMTIGSSYCGSNHIPQDPDASRASSNGIWTATLSVEPEADRDDVPRTIPQSEKGKSEMLEPTTTSSSGGSGSSLGKTCSLSTRNQGQKRKGVDVEESEDQSEETELKSATGNKASQRAGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQLMWMGSGMAPMMFPGIQHYMSQMGMGMATPPFPPAIHNSMQLPRVPLDQSVSASQTPNQTLMCQNPILGAFNYQNQMQNPALSEQYARFMSYHLMQNASQPMNVFRYGPQAVQHSQTMITPGNSSGNMSGAANIDEAVSGKMGKPLTFFSLLWLTTKSGYHISYMKLHLLPVPVGKQVVTNRC 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00923 585 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 351 426 IPR036638 GO:0046983
Cca09g00923 585 CDD bHLH_AtPIF_like 348 411 - -
Cca09g00923 585 PANTHER TRANSCRIPTION FACTOR PIF5 1 527 - -
Cca09g00923 585 SMART finulus 354 403 IPR011598 GO:0046983
Cca09g00923 585 Coils Coil 354 374 - -
Cca09g00923 585 MobiDBLite consensus disorder prediction 259 273 - -
Cca09g00923 585 Gene3D - 343 404 IPR036638 GO:0046983
Cca09g00923 585 MobiDBLite consensus disorder prediction 279 310 - -
Cca09g00923 585 Pfam Helix-loop-helix DNA-binding domain 352 398 IPR011598 GO:0046983
Cca09g00923 585 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 527 IPR031066 -
Cca09g00923 585 MobiDBLite consensus disorder prediction 256 361 - -
Cca09g00923 585 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 397 IPR011598 GO:0046983
Cca09g00923 585 MobiDBLite consensus disorder prediction 346 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00923 Cca-Chr9 27379004 27384947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00923 1 98 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 37.736 1.19e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca09g00923 HLH 1.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00923 K16189 - gmx:100784531 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00923 09 27379004 27384947 Cca09g00923 09 27379004 27384947 ECH