LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g00912	ATGACCACTCTCATTCTCCGGAGATCCTCTTCCCTACTCTCGCGCCGCTTCTTCGCCGCTCTCGCCTCCGTCCAGCCGCTCCCGCACCACCGCCACGGTGTCTCCGGCGACGGAGTTAGGTCATTTCACGCCAGATCCCTACCGTTCAGTTTCCGCTCGTCGCCGGTCTCTCGCGCGCCGCAGTTCGCCCTAGAGCGCGATTACTCTAACGATGATGAAGCTTTAGGCGCCAACGGCGACGAAGGACTCGAGATCGCGAAGCTCGGGATCTCTCCGGAGATCGTGGATGCTCTGGCTAAGAGAGGAATCGCGAAGCTCTTTCCCATTCAGAGAGCTGTGCTGGAACCAGCTATGCAAGGACGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGACAGGATCATTAAGTTTAATGCTAAGCATGAGCGAGGAAGGGATCCTTTGGCTTTGGTTTTGGCTCCAACTAGAGAACTTGCACGGCAGGTTGAGAAGGAGTTCATTGAGACTGCACCTAACTTGGACACAATCTGTCTTTATGGGGGTATGCCTATCCAGCAACAAATGAGGCAACTTAATTATGGTGTAGATATTGCAGTAGGCACACCTGGTCGAATTATTGATCTTCTCAACAGGGGTGCACTGAATTTGAACAGTGTTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGATGTGGAGAAGATCTTGGAGAGGTTGTCTCCAAATCGTCAAACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAATGAGTATTACCCGCAATTATCTAAACAACCCCCTAACCATTGATCTTGTTGGAGATTCGGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCTATTGTGTCTGATCTATACACTAAAGCAGGAATTCTGGCACCTCTGATAACTGAACATGCGAATGGAGGAAAATGTATTGTTTTCACCCAAACCAAACGTGATGCTGATCGATTATCATATATCATGGCAAAAAGCCTTAGATGTGAGGCCTTGCATGGAGATATTTCACAAACTCAGAGGGAAAGGACTCTCGCTGGCTTCAGAAACAACAATTTTAATGTTTTAGTAGCAACTGATGTTGCTTCACGAGGGCTTGATATTCCAAATGTGGATCTCGTAATACATTATGATCTTCCCAATTCATCAGAGATATTTGTTCATCGATCTGGACGAACAGGCCGTGCTGGGAAGAAAGGAGCTGCTATTCTTGTTTACTCAGAAGATCAATTCAGGGCTGTGAAGACTATTGAGCGTGATGTTGGATGCAAATTTACAGAGCTACCAAAGATTGATGTTCCAAGTGGATCAGCAGAGATGTTTGGTGGGATGGGTGGTGGCAATTTTGGCCCTTTTGGAGGTATGAGGGATCGTCAATCTAGAGGTTCAGGTTTTGGTCGCAGTCCTGGATTTAGCCGTTCTGGGAGTTACAGTAACTCTGGATTTGGTCGATCTAACTATGGAAATTCCAGTGGGATGGGAAGGTTTGGAGGACCAAATTCTAGCCATTTTGGCGGCCCTGGTTCAGGTCAGTTAGGAGGATCTTCTGGTAATTCATCTGGTGAAATGGGTAGATATGATGGCTTCGGTTCAGGTCAAGCAGCAACTCAATTTGGAGGAAATTCTTTCCCAGATGGTTTTGGAGGATTTGGTGGTTCAGGTCAAGCAGGAGCTCAATCTGGTGGAAATTCTCATCCAGGTGGTTTTAGAGGATTTGGTAGTTCAGATCGATATAGCAGTTTTGGAGATTTTGGGCAAGGTCAATCTGGTGCATTTGGTGACAGAAAGTCTAGCCAAAGCAGCAGCTTTGGTGATTCACGTGGTAGTGGTTTCGGTGCTTTTGGTAATGACAATTATAATGGAGGAAAGTCGTTTTAA	1953	0.4619	MTTLILRRSSSLLSRRFFAALASVQPLPHHRHGVSGDGVRSFHARSLPFSFRSSPVSRAPQFALERDYSNDDEALGANGDEGLEIAKLGISPEIVDALAKRGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDRIIKFNAKHERGRDPLALVLAPTRELARQVEKEFIETAPNLDTICLYGGMPIQQQMRQLNYGVDIAVGTPGRIIDLLNRGALNLNSVQFVVLDEADQMLQVGFQEDVEKILERLSPNRQTLMFSATMPSWIMSITRNYLNNPLTIDLVGDSDQKLADGISLYSIVSDLYTKAGILAPLITEHANGGKCIVFTQTKRDADRLSYIMAKSLRCEALHGDISQTQRERTLAGFRNNNFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGAAILVYSEDQFRAVKTIERDVGCKFTELPKIDVPSGSAEMFGGMGGGNFGPFGGMRDRQSRGSGFGRSPGFSRSGSYSNSGFGRSNYGNSSGMGRFGGPNSSHFGGPGSGQLGGSSGNSSGEMGRYDGFGSGQAATQFGGNSFPDGFGGFGGSGQAGAQSGGNSHPGGFRGFGSSDRYSSFGDFGQGQSGAFGDRKSSQSSSFGDSRGSGFGAFGNDNYNGGKSF	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g00912	650	Gene3D	-	84	292	IPR027417	-
	Cca09g00912	650	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	317	466	IPR001650	-
	Cca09g00912	650	CDD	SF2_C_DEAD	302	431	-	-
	Cca09g00912	650	Pfam	DEAD/DEAH box helicase	107	272	IPR011545	GO:0003676\|GO:0005524
	Cca09g00912	650	MobiDBLite	consensus disorder prediction	529	547	-	-
	Cca09g00912	650	SMART	helicmild6	342	422	IPR001650	-
	Cca09g00912	650	MobiDBLite	consensus disorder prediction	604	632	-	-
	Cca09g00912	650	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	114	288	IPR014001	-
	Cca09g00912	650	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	83	111	IPR014014	GO:0003724
	Cca09g00912	650	Gene3D	-	305	463	IPR027417	-
	Cca09g00912	650	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	157	443	IPR027417	-
	Cca09g00912	650	MobiDBLite	consensus disorder prediction	490	522	-	-
	Cca09g00912	650	Pfam	Helicase conserved C-terminal domain	317	422	IPR001650	-
	Cca09g00912	650	MobiDBLite	consensus disorder prediction	479	650	-	-
	Cca09g00912	650	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN	3	538	-	-
	Cca09g00912	650	CDD	DEADc	94	289	-	-
	Cca09g00912	650	SMART	ultradead3	102	305	IPR014001	-
	Cca09g00912	650	PANTHER	RNA HELICASE	3	538	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g00912	Cca-Chr9	26800458	26807931	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g00912	71	454	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.398	2.97e-65	219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g00912	-		-	gmx:100815635	850.121