Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00910 ATGGCCACCTTTCCTTGTTTCAGTTTTGGACCCTTTTGCATGCTATTCTTCCTTGTGTGCCTCACTAGTCCTGCTTCTGTTTCTTCACTTTCCTTGAGAAGGCAAGCTTCTATCCTTGTTTCTATGAAACAAGGTTTTGGAGTTACCAACTCTTCTCTGAGAAGCTGGGACATGTCAAACCACTTGTCCCTTTGCTCTTGGTATGGCATTCAGTGTGGCCATGATAACATGTCTGTGGTGTCACTTGACATATCCAATTTGAATGCTTCAGGGTCACTTTCACCTTCCATCACAGGACTCTTGACCCTTGAGAGTGTCTCACTTCAGGGAAATGGCTTCTCTGGGGAGTTTCCAAGTGACATTCACAAGCTACCAAGGCTGAGATTCCTCAACATGTCAAGCAACATGTTTGGTGGAAACTTGAGTTGGCAATTCTCCCAGATGAAGGAGATTGAAGTGGTGGATGCCTATGACAATGCTTTCAATGGATCACTTCCTGAGGGTGTCATTGAGCTCCCAAGGCTCAAGCACTTGAACTTTGGAGGGAATTACTTCTCTGGGGTAATCCCTCCTACCTATGGAAAAATGGAGCAACTCAACTTTTTGTCCCTTGCAGGGAATGATTTGAGAGGGTTCATACCAAGTGAGCTTGGAAATCTCACTAACTTGACTCATCTTTACTTGGGGTACTACAATCAGTTTGATGGTGGAATACCACTTGAGTTTGGTAAGCTCACCAATTTGGTTCATCTAGACATTGCAAACTGTGGTTTGACAGGTCCAATTCCTGTTGAGTTGGGAAACCTCATCAAGTTAGACACTCTCTTCTTGCAAACCAATCAGCTAAGTGGCTCAATCCCTCCTCAGCTAGGAAACTTGACCAGCTTGAAAGCTCTTGATCTGTCATTTAACATGCTCACAGGAGGCATCCCTTATGAGTTTTCATCTCTTCATGAGCTTACTCTCTTGAACTTGTTTATAAACAAGTTGCATGGGGAAATTCCTCACTTCATTGCTGAGCTACCTAAGTTGGAGACTCTCAAGCTTTGGCAGAACAACTTCACTGGAGTGATTCCGTCAAGTCTTGGTCAAAATGGGAGGTTGGTTGAGCTTGACTTGTCAACAAATAAGCTCACCGGTATGAACTTTCTCTATGGATCTTTGCCTTATGAACTTGGTAAATGCCACACACTCCAAAGAGTCCGTTTGGGACAAAACTATTTAACTGGGCCACTTCCACTTGGGTTTCTTTATTTGCCTCAGCTATCTCTTGTGGAGCTACAGAACAATTATCTTAGTGGTGGCTTTCCACAATCAACAAGCAACACACCCTCCAAACTAGCACAGCTGAACCTATCAAACAACCGCTTCTCAGGGTCTCTTCCAACCACAATTGCAAATTTTCCAAACTTGCAAATTCTTATGCTTAGTGGAAACAGATTCTCAGGAGAAATCCCACCAGATATAGGGAGATTGAAAAGTATTCTCAAGTTGGATATAAGTTTCAACAACTTTTCTGGCACTATTCCACCTGAGATAGGTAACTGTGTCTTACTCACCTATTTAGATTTGAGCCAAAACCAACTCTCAGGCCCTATTCCAGTCCAAGTTGCTCGAATTCACATATTAAACTATCTCAATGTCTCATGGAACCACCTAAACCAAAGTCTTCCCAAGGAACTCAGGGCCATGAAGGGCTTAACTTCAGCAGATTTCTCTCACAATAACTTCTCAGGCTCAATCCCTGAGGGAGGGCAATTCTCAATCTTTAATTCCACATCCTTTGTTGGCAACCCTCAGCTATGTGGCTATGTCTCCAAGCCATGCAACCTTTCTTCAACAGCAGTGTTGGAATCTCAACAAAAAGGCAGTTCAAAACCTGGGGTCCCTGGGAAATTCAAGTTCCTTTTTGCATTGGCCTTGTTGGGGTGCTCATTGGTGTTTGCAACCTTGGCCATCATCAAGAGTAGAAAGACAAGGAGGAAATCCAATTCATGGAAGATAACAGCATTCCAGAAGCTGGAATATGGGAGTGAGGACATCATAGGGTGCATAAAGGAAAGCAATGTGATAGGAAGAGGTGGATCTGGGGTTGTGTACAGAGGAACCATGCCAAAGGGAGAGGAAGTGGCAGTGAAGAAGCTATTAGGAATCAACAAAGGTTCTTCCCATGACAATGGCCTCTCTGCTGAGATTAGAACACTGGGAAGAATCAGACACAGGTACATCGTGAGGTTGCTAGCATTTTGCTCAAACAGAGAGACCAATTTGCTTGTCTATGATTACATGCCAAATGGAAGCTTGGGGGAAGTGTTGCATGGGAAGAGGGGTGAGTTTCTCAAGTGGGATACTAGGCTCAAAATAGCCATAGAAGCTGCTAAAGGACTTTGCTATTTGCACCATGATTGTTCCCCTTTGATCATCCATAGAGATGTCAAGTCAAACAACATTTTGTTGAACTCTGATTTTGAGGCTCATGTTGCTGATTTTGGACTTGCCAAGTTCATGCAAGATAATGGTGCATCAGAATGCATGTCTTCCATTGCTGGTTCTTATGGCTATATTGCTCCAGAATATGCATACACATTGAAAGTGGATGAGAAAAGTGATGTTTATAGCTTTGGAGTGGTGCTGCTAGAACTGATAACAGGGAGAAGGCCAGTGGGGGACTTTGGAGAAGAAGGATTAGACATTGTTCAATGGACCAAGATGCAAACTAATTGGAACAAAGAGATGGTGATGAAGATCCTTGATGAGAGGCTGCATAACATTCCTTTAGATGAAGCAAAGCAAGTGTTTTTTGTGGCAATGTTGTGTGTTCATGAACACAGTGTGGAGAGACCAACCATGAGGGAAGTAGTTGAAATGCTTGCACAAGCAAAGCAACCAAACACATTTCAAATGCAGTGA 2910 0.4326 MATFPCFSFGPFCMLFFLVCLTSPASVSSLSLRRQASILVSMKQGFGVTNSSLRSWDMSNHLSLCSWYGIQCGHDNMSVVSLDISNLNASGSLSPSITGLLTLESVSLQGNGFSGEFPSDIHKLPRLRFLNMSSNMFGGNLSWQFSQMKEIEVVDAYDNAFNGSLPEGVIELPRLKHLNFGGNYFSGVIPPTYGKMEQLNFLSLAGNDLRGFIPSELGNLTNLTHLYLGYYNQFDGGIPLEFGKLTNLVHLDIANCGLTGPIPVELGNLIKLDTLFLQTNQLSGSIPPQLGNLTSLKALDLSFNMLTGGIPYEFSSLHELTLLNLFINKLHGEIPHFIAELPKLETLKLWQNNFTGVIPSSLGQNGRLVELDLSTNKLTGMNFLYGSLPYELGKCHTLQRVRLGQNYLTGPLPLGFLYLPQLSLVELQNNYLSGGFPQSTSNTPSKLAQLNLSNNRFSGSLPTTIANFPNLQILMLSGNRFSGEIPPDIGRLKSILKLDISFNNFSGTIPPEIGNCVLLTYLDLSQNQLSGPIPVQVARIHILNYLNVSWNHLNQSLPKELRAMKGLTSADFSHNNFSGSIPEGGQFSIFNSTSFVGNPQLCGYVSKPCNLSSTAVLESQQKGSSKPGVPGKFKFLFALALLGCSLVFATLAIIKSRKTRRKSNSWKITAFQKLEYGSEDIIGCIKESNVIGRGGSGVVYRGTMPKGEEVAVKKLLGINKGSSHDNGLSAEIRTLGRIRHRYIVRLLAFCSNRETNLLVYDYMPNGSLGEVLHGKRGEFLKWDTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDFEAHVADFGLAKFMQDNGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRRPVGDFGEEGLDIVQWTKMQTNWNKEMVMKILDERLHNIPLDEAKQVFFVAMLCVHEHSVERPTMREVVEMLAQAKQPNTFQMQ 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00910 969 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524
Cca09g00910 969 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 14 966 - -
Cca09g00910 969 Gene3D Transferase(Phosphotransferase) domain 1 763 969 - -
Cca09g00910 969 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Cca09g00910 969 SMART serkin_6 685 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00910 969 PANTHER UNNAMED PRODUCT 14 966 - -
Cca09g00910 969 SUPERFAMILY Protein kinase-like (PK-like) 679 957 IPR011009 -
Cca09g00910 969 SUPERFAMILY L domain-like 286 617 - -
Cca09g00910 969 SUPERFAMILY L domain-like 61 381 - -
Cca09g00910 969 Gene3D Ribonuclease Inhibitor 381 613 IPR032675 -
Cca09g00910 969 Gene3D Ribonuclease Inhibitor 231 380 IPR032675 -
Cca09g00910 969 Pfam Protein tyrosine and serine/threonine kinase 687 957 IPR001245 GO:0004672|GO:0006468
Cca09g00910 969 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Cca09g00910 969 Gene3D Ribonuclease Inhibitor 30 230 IPR032675 -
Cca09g00910 969 SMART LRR_typ_2 196 220 IPR003591 -
Cca09g00910 969 SMART LRR_typ_2 341 365 IPR003591 -
Cca09g00910 969 SMART LRR_typ_2 468 492 IPR003591 -
Cca09g00910 969 SMART LRR_typ_2 293 324 IPR003591 -
Cca09g00910 969 SMART LRR_typ_2 269 292 IPR003591 -
Cca09g00910 969 ProSiteProfiles Protein kinase domain profile. 685 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00910 969 Gene3D Phosphorylase Kinase; domain 1 653 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00910 Cca-Chr9 26688250 26692638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00910 32 959 Receptor kinase-like Gene Family AT5G65700 56.059 0.0 1053
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca09g00910 PK_Tyr_Ser-Thr 4.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00910 - - gmx:100803075 1770.75