Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00906 ATGAAACAGAGTGGCGGAATGGTAACTGGGTCGCGTGAAAGGAACGAACTTGTTAGAGTTAGACACGGTTCTGATAGTGGGTCCAAACCCGTGAAGAATTTGAATGGTCAGATTTGTCAAATATGTGGTGATACCATTGGATTAACAGCCACTGGAGATGTCTTTGTTGCTTGCCATGAGTGTGGCTTCCCAATTTGTCATTCTTGTTATGAGTATCAGTTGAAAACTGTGAACCAATCTTGTCCCCAGTGCAAGACTAGATTCACAAGTCACCAAGAGGGGGCTCGAGTGGAGGGAgatgatgacgatgaagacgatgctgatgatctagataatgagatCAACTATGGCCAAGGAAACAATTCCAACGCAGGGATGCAATGGGAAGAAGATGCTGACCTCTCTTCATCTTCTGGACATGATTCTCAAATACCAAATCCACATCTAGCAAATGGGCAAATGGTGTCTGGTGAGATTCCATGCGCTGCTTCTGAGGCTCAATCTATGCAAACTACGTCAGGTCCTATGGGTCAATCCGAAAAGGCTCACTCACTTCCCTATGCTGATCCAAAGCAACTAGGTCCTGAGAGTGACGAAGAGATAAGAAGAGTGCCGGAGATTGGAGGTGAAAGTGCTGGAACTTCAGCCTCTCGGCCGGATGCCGGTTCAACTGGTGGTCCGGAACGTGTTCAGGGGACAGGAGAGGGACAAAAGAAGAGAGGGAGAAGCCCAGCTGATAAAGAAAGCAAGCGGCTAAAAAGGCTACTGAGGAATAGGGTTTCGGCTCAGCAAGCAAGGGAGAGGAAGAAGGCATACTTGATTGATTTGGAAACAAGAGTCAAAGACTTGGAGAAGAAGAATACAGAGCTCAAAGAAAGACTTTCCACTTTGCAGAATGAGAATCAAATGCTTAGACAAATATTGAAGAACACAACAGCAAGCAGGAGAGGGAGCAATAGTGGTACTAATAATGCTGAATGA 981 0.4404 MKQSGGMVTGSRERNELVRVRHGSDSGSKPVKNLNGQICQICGDTIGLTATGDVFVACHECGFPICHSCYEYQLKTVNQSCPQCKTRFTSHQEGARVEGDDDDEDDADDLDNEINYGQGNNSNAGMQWEEDADLSSSSGHDSQIPNPHLANGQMVSGEIPCAASEAQSMQTTSGPMGQSEKAHSLPYADPKQLGPESDEEIRRVPEIGGESAGTSASRPDAGSTGGPERVQGTGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNTELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNNAE 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00906 326 CDD bZIP_HY5-like 251 302 - -
Cca09g00906 326 Pfam bZIP transcription factor 247 308 IPR004827 GO:0003700|GO:0006355
Cca09g00906 326 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 253 268 IPR004827 GO:0003700|GO:0006355
Cca09g00906 326 SUPERFAMILY RING/U-box 23 109 - -
Cca09g00906 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 113 IPR013083 -
Cca09g00906 326 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Cca09g00906 326 Coils Coil 245 314 - -
Cca09g00906 326 Gene3D Single helix bin 269 310 - -
Cca09g00906 326 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 153 318 - -
Cca09g00906 326 MobiDBLite consensus disorder prediction 163 179 - -
Cca09g00906 326 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 248 311 IPR004827 GO:0003700|GO:0006355
Cca09g00906 326 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 153 318 IPR044280 GO:0000981|GO:0045944
Cca09g00906 326 MobiDBLite consensus disorder prediction 89 267 - -
Cca09g00906 326 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Cca09g00906 326 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cca09g00906 326 MobiDBLite consensus disorder prediction 98 112 - -
Cca09g00906 326 MobiDBLite consensus disorder prediction 114 150 - -
Cca09g00906 326 MobiDBLite consensus disorder prediction 233 267 - -
Cca09g00906 326 SUPERFAMILY Leucine zipper domain 250 308 IPR046347 GO:0003700|GO:0006355
Cca09g00906 326 SMART brlzneu 246 310 IPR004827 GO:0003700|GO:0006355
Cca09g00906 326 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00906 Cca-Chr9 26569270 26573365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00906 1 195 Glycosyltransferase AT4G32410 56.633 7.39e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca09g00906 zf-UDP 1.7e-36 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00906 K10999 - gmx:548004 585.874