Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00903 ATGTCCAAACCACCCTTACCTGCTGAGAGAGTTCCCGCAGTCCACAGTATAAATTGGCACAATCTGAATTCGGAAATTGTCATCAGAATGTTAGCGAGTTCTCCTGAGTCGTTCGAAGGGTTCCACGAGGGATGTGTTTGGCGTCAAGAGAAGTTGGTGCTGTCGCTTCTCAGTGCTGAGAGCGAGGAGCAACAGAAAAGCGTAATCGAGCAAGTTCTGTGTGACTACCAGCAGTTTCTGGAAGAGAAAGCGAGGTTGGCAAACGCTGACGTCTTCCTCCTCTTCTTGGCGCCGTGGCTGTCGGCGTACGAGAGGGCGCTCCTCTGGATCGGGGACTACAAGGCGTCGTTGATAGTCCGTTTACTAGAGGGCGGTGTGGAGGGGTTGACGgcggagcagagggagggggtggagcgtgtgagggaggagacgaagagagcggagAAGGAGGTGTTTGAGGCAATGGTGTCGGTTCAGGAGAGCATGGCCAGCCCGCGCATGGTGGGGCAGGAGCAGGAGCAGGAAGCGGCCATTCAAAGGGGGAAGAAGAAGAGAGGTGTAAAAAAAGAAGAAAGGTGCACGCAGCAAAAGGAAGAAGAGAGGTGTGCGAAGGAAAAAGAAGAAGAGAGcaccgccaccgtgcaccgtgctccgtcgtgccacgccaccgcgcaccgCCACGGGTTTGGCATGGCAAGGAGACAGAGCAGCAGCGAGAGTGAGAATGACACGAGAAAATGCAGTGGTAGCGAATCTGAGGATGATAAGAGGGATAGGCATCGACGTGGTGGTGGGAGTAGTAAGAAGAAGAGTTCCAAATCAGACCGCTATCGCAGGGAGGACAATGGTGGCAGTGATTCAATAGAAGAACGAATGCGAATATATTCAGTTGTACACAGAGTAGTTTATGCTGAATCTGTTCCTCATCTTCAAGATGGAGAATGTATATATGCAAACTTGCCGCTGAAGGATTCTCAAGTCAACAATGAAAACGAAGCCAGTTTAATAAATAATTCTGATATTCAACCGAAGGAGAGGTTGTCAAGTCATACTACACAAGGATGCAAGTCTGACTCCTTTAGGTTTGTTGAGTATTGGGTTCCTGTACAAATATCTAATGTGCAGCTCGAGCAGTATTATGATATTTTGCTTTCCAATGCTTCAATTCTTCGCTCATCATCAAAGGTTGATAGTGGGGAGGCTGTTCGAGATGTTCTTATTTCAATTCGAAAGGCCATGGAGCTGTCTGGAACACTGCAAAAGTGGAGTCAGGGTCAATTGTCGCTGTTTTTAGCCTTGGAACTGTTGGGCTTGCTGTTGCGGAGGGTGCAAAAGCTGCTGGTGCATCCCGGATTATTGGCATAG 1365 0.4462 MSKPPLPAERVPAVHSINWHNLNSEIVIRMLASSPESFEGFHEGCVWRQEKLVLSLLSAESEEQQKSVIEQVLCDYQQFLEEKARLANADVFLLFLAPWLSAYERALLWIGDYKASLIVRLLEGGVEGLTAEQREGVERVREETKRAEKEVFEAMVSVQESMASPRMVGQEQEQEAAIQRGKKKRGVKKEERCTQQKEEERCAKEKEEESTATVHRAPSCHATAHRHGFGMARRQSSSESENDTRKCSGSESEDDKRDRHRRGGGSSKKKSSKSDRYRREDNGGSDSIEERMRIYSVVHRVVYAESVPHLQDGECIYANLPLKDSQVNNENEASLINNSDIQPKERLSSHTTQGCKSDSFRFVEYWVPVQISNVQLEQYYDILLSNASILRSSSKVDSGEAVRDVLISIRKAMELSGTLQKWSQGQLSLFLALELLGLLLRRVQKLLVHPGLLA 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00903 454 MobiDBLite consensus disorder prediction 238 261 - -
Cca09g00903 454 PANTHER TRANSCRIPTION FACTOR HBP-1B 32 181 - -
Cca09g00903 454 MobiDBLite consensus disorder prediction 162 285 - -
Cca09g00903 454 Coils Coil 188 208 - -
Cca09g00903 454 PANTHER - 32 181 - -
Cca09g00903 454 MobiDBLite consensus disorder prediction 188 214 - -
Cca09g00903 454 Pfam Seed dormancy control 58 122 IPR025422 GO:0006351|GO:0043565
Cca09g00903 454 MobiDBLite consensus disorder prediction 268 285 - -
Cca09g00903 454 ProSiteProfiles DOG1 domain profile. 35 241 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00903 Cca-Chr9 26448064 26452882 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00903 68 163 bZIP Transcription Factor Family AT5G06950 29.167 2.45e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00903 - - ccaj:109790136 225.328