Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00894 ATGTCACGCACTGATACGATGACGACGACTTCGGATCTTAATAGAACTGGTCCCGTTGAAAGAGACATTGAGCAGGCCATTACTGCTTTAAAAAAAGGGGCTTACTTGCTCAAGTATGGAAGAAGAGGAAAGCCCAAGTTCTGTCCCTTTCGGCTTTCCAATGACGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAGCGCCTTAAACTAAATAATGTTTCTAGGATTATATCTGGACAACGCACGCCAATCTTTCAGAGATATCCGCGGCCTGAGAAGGAATATCAGTCATTTTCTCTCATTTATAATGATAGATCACTAGACTTGATTTGCAAGGATAAGGATGAAGCTGAGGTTTGGTTCAGCGGATTGAAAGCATTAATTTCCCGCAGCCATCACCGGAAGTGGAGACCAGAGTCAAGAAGTGAAGGTATTCCATCTGAAGCTAATAGTCCTCGAACATACACCAGAAGTTCTCCCTTGAATTCTCCATTTGGTAGTAATGAAAGTTTGCAAAAGGATAGTGGGGATCATCTTCGCCTTCATAGCCCATATGAAAGCCCCCCTAAGAATGGTTTGGATAAAGCATTTTCAGATGTGGTTTATTATCCTATTCCTCCAATGGGTTTCTTCCCTCCAGACTCAGCCAGTGGTTCACTCCACTCTGTGTCATCAGGAGGATCAGATAGCATGCATGGTCAAATGAAGACAATGCCTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCCGTTAGTTCATCTAGCCAAGGTTCTGGCCATGATGACGGTGATGCCTTGGGGGATGTTTTTATTTGGGGGGAAGGCACAGGTGATAGTGTACTGGGTGGTGGAGCTCACCAAGTTGAGAGTAATTTTGGTGTCAAAATGGATTCTCTGTTGCCCAAAGCCTTGGAATCGGCAGTAGTTCTTGACGTACAGAATATTGCTTGTGGTGGGAAACATGCTGCCTTGGTGACCAAACAAGGTGAAATTTTTTCCTGGGGGGAAGAATCAGGAGGAAGGCTTGGGCATGGAGTTGATTCTGATGTTCCCCATCCAAAGCTTATTGAATCTCTAAGTAATACAAATATCGAACTTGTAGCTTGTGGGGAGTACCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGCACTTACAATTATGGTCTTCTGGGGCATGGGAATCAGGTGAGCCACTGGGTCCCCAAAAGAGTAAATGGCCTTTTGGAGGGCATACATGTTTCATCCATTTCTTGTGGTCCATGGCACACTGCTGTTGTAACCTCTGCTGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGAGACCGAAAAAGTGTTTCCTTGCCTAGGGAAATAGAGTCCCTAAAGGGTCTTCGAACTGTGCAGGCTGCTTGTGGTGTCTGGCATACTGCTGCTGTTGTGGAGGTCATGGTTGGAAATTCAAGTTCCAGCAATTGCTCTTCCGGGAAGCTGTTTACATGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAATCAAAACTTGTTCCAACCTGTGTCGTGGCTCTTGTTGAACCTAATTTTTGTCAAGTTGCCTGCGGTCATAGTATGACTGTTGCACTTTCTAGATCAGGCCATGTCTATACAATGGGCAGTTGTGTATATGGCCAGTTAGGAAATACTCAAGCTGATGGGAAGCTACCAACTCGTGTCGAAGGAAAGCTTTCGAAGAGTTTTGTTGAGGAGGTAGCTTGTGGTGCATATCATGTTGCGGTGTTAACTTCAAGAACTGAAGTTTACACGTGGGGGAAGGGTGCAAATGGTCGTTTAGGCCATGGGGATACTAATGATAGAAACTCCCCAACATTAGTAGAAGCACTGAAAGACAAACAAGTAAAAAGTATTGCTTGTGGAACAAATTTCACTGCAGCCATATGCCTGCATAAGTGGGTATCTGGTGTTGACCAGTCCATGTGTTCTGGATGCCGTCTGCCATTCAATTTCAAAAGAAAACGCCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGCAGTAGTAAGAAATCTGTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAAATAAGGAAAACTACAGAAACTGATTCTTCATCTCAGGCTTCTATGAGCAGAAGAGGAAGTGTTAATCAGGGGTCACTTGAGTTTATTGGTAAGGATGATAAATTGGATTCCAGATCTCATAATCAACATGCCAGGTTTTCTTCAATGGAATCCTTAAAACAAGTAGACAGCAGATCTTCAAAGAAAAATAAAAAATTGGAATTCAACAGTAGCCGCGTGTCCCCTGTTCCAAATGGAGGTTCACAATGGGGAACAATGAATATTTCTAAATCATTTAATCCTGTTTTTGGATCATCAAAAAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGGGCAACATCCCCAATATCTAGACGAACTAGTCCACCACGTTCAACTACTCCAACCCCCACTCTTGGGGGACTGGCATCCCCAAAGATAGTTGTGGATGATGCTAAGAGAACCAACGATAGCCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTTGAAAACCTGACTCGGAAAGCGCAGCTTCAAGAAGTTGAGTTGGAAAGAGCAACTAAACAGTTAAAAGAAGCAATAGCAATTGCAAGCGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTCACTGCCCAGTTGAAGGACATGGCCGAGAGGCTGCCTGTAGGAGCATCTAGGAATGTCAGATCACCACCTTCTGTTGCTTCATTTGGCTCAAATCCTGGTTCCAATGACCTTACCAGTGCTTCTTTTGATCGATTGAATATTCAAGCAACAAGCCCAGAATCAGACTCAACTGGATCTAATAACCAGTTACTTTCAAATGGATCAACCACCATCACCAACCGGAGTGCAGGACATATTAAACACAGTCAATCAGATGCAACTAGCAGAAATGGGAGCAAAACAAAGGATAATGAGACTGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACTCTCACCTCTCTACCAGGAGGGGTTATAGATCTTAAGAGAGTTCGCTTCAGTCGTAAGCGGTTTAGTGAGAAACAAGCAGAACAATGGTGGGCTGAGAATCGGGCAAGAGTATATGAACAGTACAATGTGCGCACGATTGACAAGTCGAGCATTGGTGTTGGGAGTGAGGACCTGGCTCATTGA 3321 0.4342 MSRTDTMTTTSDLNRTGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKRLKLNNVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRPESRSEGIPSEANSPRTYTRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKAFSDVVYYPIPPMGFFPPDSASGSLHSVSSGGSDSMHGQMKTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDSVLGGGAHQVESNFGVKMDSLLPKALESAVVLDVQNIACGGKHAALVTKQGEIFSWGEESGGRLGHGVDSDVPHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGLLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTCVVALVEPNFCQVACGHSMTVALSRSGHVYTMGSCVYGQLGNTQADGKLPTRVEGKLSKSFVEEVACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTNDRNSPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSVKASMAPNPNKPYRVCDNCFNKIRKTTETDSSSQASMSRRGSVNQGSLEFIGKDDKLDSRSHNQHARFSSMESLKQVDSRSSKKNKKLEFNSSRVSPVPNGGSQWGTMNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRTSPPRSTTPTPTLGGLASPKIVVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEVELERATKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPVGASRNVRSPPSVASFGSNPGSNDLTSASFDRLNIQATSPESDSTGSNNQLLSNGSTTITNRSAGHIKHSQSDATSRNGSKTKDNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRTIDKSSIGVGSEDLAH 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00894 1106 CDD FYVE_like_SF 667 720 - -
Cca09g00894 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 269 330 IPR000408 -
Cca09g00894 1106 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 670 731 IPR013083 -
Cca09g00894 1106 MobiDBLite consensus disorder prediction 954 1024 - -
Cca09g00894 1106 Pfam Transcription factor BRX N-terminal domain 919 951 IPR027988 -
Cca09g00894 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 606 657 IPR000408 -
Cca09g00894 1106 SUPERFAMILY RCC1/BLIP-II 269 659 IPR009091 -
Cca09g00894 1106 SUPERFAMILY PH domain-like 22 130 - -
Cca09g00894 1106 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 23 1092 - -
Cca09g00894 1106 MobiDBLite consensus disorder prediction 947 1037 - -
Cca09g00894 1106 MobiDBLite consensus disorder prediction 146 174 - -
Cca09g00894 1106 Pfam Pleckstrin homology domain 24 130 IPR001849 -
Cca09g00894 1106 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 662 724 IPR017455 -
Cca09g00894 1106 Gene3D - 498 669 IPR009091 -
Cca09g00894 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 502 553 IPR000408 -
Cca09g00894 1106 CDD PH_PLC_plant-like 21 131 - -
Cca09g00894 1106 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 424 434 IPR000408 -
Cca09g00894 1106 Pfam Transcription factor regulating root and shoot growth via Pin3 1032 1087 IPR013591 -
Cca09g00894 1106 MobiDBLite consensus disorder prediction 836 859 - -
Cca09g00894 1106 Coils Coil 868 944 - -
Cca09g00894 1106 PRINTS Chromosome condensation regulator RCC1 signature 314 327 IPR000408 -
Cca09g00894 1106 PRINTS Chromosome condensation regulator RCC1 signature 333 349 IPR000408 -
Cca09g00894 1106 PRINTS Chromosome condensation regulator RCC1 signature 383 399 IPR000408 -
Cca09g00894 1106 PRINTS Chromosome condensation regulator RCC1 signature 424 440 IPR000408 -
Cca09g00894 1106 PRINTS Chromosome condensation regulator RCC1 signature 440 454 IPR000408 -
Cca09g00894 1106 PRINTS Chromosome condensation regulator RCC1 signature 543 561 IPR000408 -
Cca09g00894 1106 PRINTS Chromosome condensation regulator RCC1 signature 601 622 IPR000408 -
Cca09g00894 1106 Pfam FYVE zinc finger 658 724 IPR000306 GO:0046872
Cca09g00894 1106 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 23 1092 - -
Cca09g00894 1106 MobiDBLite consensus disorder prediction 836 862 - -
Cca09g00894 1106 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 476 486 IPR000408 -
Cca09g00894 1106 SMART fyve_4 656 725 IPR000306 GO:0046872
Cca09g00894 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 438 489 IPR000408 -
Cca09g00894 1106 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 317 327 IPR000408 -
Cca09g00894 1106 Gene3D - 218 392 IPR009091 -
Cca09g00894 1106 Gene3D - 393 491 IPR009091 -
Cca09g00894 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 554 605 IPR000408 -
Cca09g00894 1106 MobiDBLite consensus disorder prediction 137 194 - -
Cca09g00894 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 438 486 IPR000408 -
Cca09g00894 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 501 550 IPR000408 -
Cca09g00894 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 553 602 IPR000408 -
Cca09g00894 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 382 434 IPR000408 -
Cca09g00894 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 331 379 IPR000408 -
Cca09g00894 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 607 654 IPR000408 -
Cca09g00894 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 331 382 IPR000408 -
Cca09g00894 1106 Gene3D - 22 138 IPR011993 -
Cca09g00894 1106 SUPERFAMILY FYVE/PHD zinc finger 658 728 IPR011011 -
Cca09g00894 1106 Pfam Unstructured region between BRX_N and BRX domain 961 1030 - -
Cca09g00894 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 383 437 IPR000408 -
Cca09g00894 1106 MobiDBLite consensus disorder prediction 752 804 - -
Cca09g00894 1106 ProSiteProfiles BRX domain profile. 1033 1088 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00894 Cca-Chr9 26180374 26191564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00894 928 1097 Major Intrinsic Protein MIP AT1G31880 33.333 3.88e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00894 - - gmx:100791947 2046.55