Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00889 ATGTGGCCGGGGGCGTCGAGGTCATTCAACTACAACCTGGCACCTCACCACGACATCTACGTGGTGGCGCCGGCTTCCTCGTTCCACCACCACAACGACGCCGTTTTGTCGGATCCGAACAACGGCAGCGGCACGAACTCCACTGCACTCGGCGTGAACGTGTTCCCCCTCCTAAGCGCGGCGGCGCCGTGCCTGGAGAGCGAGGGCATAATGGGAAACAGCGTCAGCAGCAACCACCGCAACAGAATTCAGCTATGGCAAGGGCAAGGGCAAGGGCACGGGTCCCCGGGTCACGAGGGCATAATGGGAAacaacaaccacaaccaccaccaccaccaccaccGTAACAGAATTCAGTTATGGCAAGATCAGGAGTCTCCGCCGCCGCAGCAGCAACAGCACGTGGAACACGAGGCGAGTGGGAGTGCGGGGAGCACGTGCCAGGACTGCGGGAACCAGGCGAAGAAGGATTGCAGTCACAGGAGGTGCAGGACGTGCTGCAAGAGTAGGGGTTTCGATTGCGCTACGCACGTGAAGAGCACGTGGGTGCCTGCTGCGCGCCGGAGGGAGCGCCAGCTCATGGCCGTCACGGCGGCGGTTGGCTCCACTGGCTCCACCTCCGGCGCCAAGAAAGCCAGGATTGTTGCTTCTCAGACCACCACCACTTCGCATACTTCCACCTCTAATAACACCACTCCTCCTAGGAGTTTCGACACGGGTTCTAGCCACCAAGATGTGGGTTTCAAGGAGTCACTACCCTGTCAAGTGCGTGCACCGGCGGTGTTCAAGTGTGTTCGTGTGACGGCAGTGGATGATGGGGAAGACGAGTATGCGTATCAGGCTGTTGTGAAGATTGGTGGCCATGTCTTCAAAGGGTTTCTTTATGATCAAGGGACTGAGGCTGAGGATAAAGAGGGGTATCCTAATATATCTGAACTGCATTTGGGTGGAAATGTTGCAACTGCAAGTGATGGTGGTGGTGGGAGAAATGGTTCTCCAATGCTGGATCCTTCTGAGGTCTATGCAGCTTCTGGTGGAGGGTTACTTGGAGGTTCTTCAAACTATGGTAATCCAATAAATTAA 1083 0.5485 MWPGASRSFNYNLAPHHDIYVVAPASSFHHHNDAVLSDPNNGSGTNSTALGVNVFPLLSAAAPCLESEGIMGNSVSSNHRNRIQLWQGQGQGHGSPGHEGIMGNNNHNHHHHHHRNRIQLWQDQESPPPQQQQHVEHEASGSAGSTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMAVTAAVGSTGSTSGAKKARIVASQTTTTSHTSTSNNTTPPRSFDTGSSHQDVGFKESLPCQVRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGTEAEDKEGYPNISELHLGGNVATASDGGGGRNGSPMLDPSEVYAASGGGLLGGSSNYGNPIN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00889 360 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 252 298 IPR006511 -
Cca09g00889 360 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 17 360 - -
Cca09g00889 360 Pfam Domain of unknown function (DUF702) 144 300 - -
Cca09g00889 360 MobiDBLite consensus disorder prediction 121 146 - -
Cca09g00889 360 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 17 360 IPR007818 GO:0003700|GO:0006355
Cca09g00889 360 MobiDBLite consensus disorder prediction 202 244 - -
Cca09g00889 360 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 146 188 IPR006510 -
Cca09g00889 360 MobiDBLite consensus disorder prediction 87 146 - -
Cca09g00889 360 MobiDBLite consensus disorder prediction 318 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00889 Cca-Chr9 25955200 25958339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00889 3 340 C2H2 Transcription Factor Family AT5G12330 46.264 2.34e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Cca09g00889 DUF702 1.2e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00889 - - vra:106753021 502.671