Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca09g00888 | ATGGCTGCGGACATAGCAGTTCAAGCTCCTTCCGAAACAACCTCGGAGAACGTCGAAGCCTTGCTTGATGCTGCAAGATATGATGACATGGATGATGTTAAGAGCTTAGAAGCTAGAGGGGTTTCTCTTGATTCCAAGGATGATCAGGGGAGAACAGCTCTTCATATGGCTGCAGCTAATGGACATATTGATATTGTGGAGTATTTGATCAGTAGAGGAGTGGATCTTAATTCACCAAACGAGGAAAAGAATACACCACTTCATTGGGCGTGTCTCAATGGGCATGTTAAG | 291 | 0.4467 | MAADIAVQAPSETTSENVEALLDAARYDDMDDVKSLEARGVSLDSKDDQGRTALHMAAANGHIDIVEYLISRGVDLNSPNEEKNTPLHWACLNGHVK | 97 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca09g00888 | 97 | Pfam | Ankyrin repeats (many copies) | 19 | 70 | IPR002110 | GO:0005515 | |
| Cca09g00888 | 97 | ProSiteProfiles | Ankyrin repeat profile. | 49 | 81 | IPR002110 | GO:0005515 | |
| Cca09g00888 | 97 | ProSiteProfiles | Ankyrin repeat region circular profile. | 49 | 81 | - | - | |
| Cca09g00888 | 97 | SMART | ANK_2a | 49 | 78 | IPR002110 | GO:0005515 | |
| Cca09g00888 | 97 | PANTHER | ANKYRIN REPEAT-CONTAINING PROTEIN DDB_G0279043 | 7 | 97 | - | - | |
| Cca09g00888 | 97 | PANTHER | ANKYRIN REPEAT FAMILY PROTEIN | 7 | 97 | - | - | |
| Cca09g00888 | 97 | SUPERFAMILY | Ankyrin repeat | 13 | 96 | IPR036770 | - | |
| Cca09g00888 | 97 | Gene3D | - | 3 | 97 | IPR036770 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca09g00888 | 9 | 78 | MAP Kinase Kinase Kinase | AT2G31800 | 35.616 | 4.01e-09 | 50.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca09g00888 | - | - | gmx:100306615 | 173.711 |