Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00881 ATGACCAACAACCCCATGATGTCCCTCTCTCATTCCCCCTCCGACTCCGATTCCACCGCGCCCTTccaacgccagccaccatcaccaccaccaccCGCGAACCCTTCCTCCGCCGCAACCTCATCCGGAAAGAAGCCACGTGGCAGGCCCCCGGGCTCCAAAAACAAGCCCAAGCCCAAGCCCAACAGCGTCCTAGTACCCGAGGCCGCCGGTGTTGACCAGTCCTTCGTCATCATCGACGTGCCCCAGGGCGAGGACATCATGGGGTACATTGTCGATTTGGCTTGTCGCGAAAACCTGAGCGTGACGGTCGTCAACGGGAGCGGCAACATCGCCAGCGTCACCCTCCGCCACGCAACGCATGGCTCAGCCGCTTCCACGCTGCATGGGCCCTTCTCCCTCGTCTCATTCTCTGGCACCTTTCTTTACAACAACCATTACACCCTTCCCGCTGGGGCCACCCCTCCCCCGTGCATAACGTTCGGAATCAGCCTCTGCGACTCCGAGGGCCACGTCTTTGGCGGTGCCGTCGGCGGCAAAGTCGTCACCGGAGATATCGTCAGCCTCACCGCCTCCACCTTCAGGAATCCCAAGATTTACAAGTATGATCTAGAAGAGGATTACAACAGTGACAATGATAACAGTGATAATAATCTGACTGAAAAAGTCGATAAGATGACCTTATAA 687 0.5473 MTNNPMMSLSHSPSDSDSTAPFQRQPPSPPPPANPSSAATSSGKKPRGRPPGSKNKPKPKPNSVLVPEAAGVDQSFVIIDVPQGEDIMGYIVDLACRENLSVTVVNGSGNIASVTLRHATHGSAASTLHGPFSLVSFSGTFLYNNHYTLPAGATPPPCITFGISLCDSEGHVFGGAVGGKVVTGDIVSLTASTFRNPKIYKYDLEEDYNSDNDNSDNNLTEKVDKMTL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00881 228 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 199 - -
Cca09g00881 228 MobiDBLite consensus disorder prediction 1 67 - -
Cca09g00881 228 ProSiteProfiles PPC domain profile profile. 68 214 IPR005175 -
Cca09g00881 228 Gene3D - 75 212 - -
Cca09g00881 228 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10 214 - -
Cca09g00881 228 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 10 214 IPR014476 GO:0003680
Cca09g00881 228 Pfam Plants and Prokaryotes Conserved (PCC) domain 77 195 IPR005175 -
Cca09g00881 228 MobiDBLite consensus disorder prediction 1 22 - -
Cca09g00881 228 MobiDBLite consensus disorder prediction 206 228 - -
Cca09g00881 228 CDD DUF296 78 187 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00881 Cca-Chr9 25783931 25784750 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00881 44 207 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 37.952 3.99e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00881 - - ccaj:109811665 379.407