Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00880 ATGAACACCATTCCCATGATGTCCCTCTCCTCCTCGGACTCCGACTCCCTCGCCTTGTTCCAGCACCAACTCACGCCACCCGCCGGAAAGAGGCAGCGCGGCAGGCCCGCGGGCTCCAAAAAcaagcccaagcccaacgccctccccacaaccaagcccGCCGCCGCCGACGAGTCCGCCAAGTTCGTCCTCATCGACGTGCCCCAGGGCGCAGACGTGATCGAGTCCATCGTGGAGTTGGCTCAACGCGAGCAGGTGAGCGTGACCATCCTCAACGGCAGCGGCGCCGGCGCCAGCGTCACCCTCCAGCACGCGCCGCGTGGCTCCACCACCTTCACGCTCCATGGACCCTTCTCGCTGGTCTCCTTCAGCGGCACCTTCGTTTACGGCGGCGGAGATGGAGACTCTCCTCCCCCTCGCATGGACTTCGGAGTGAACCTCAGCAACCCCGAGGGCCAGATCTTCGGCGGCGTCGTCCGCGGCAGAGTCGTCGCCGGAGAGGACGTTAAGCTCACCGTCTCCACCTTCAAGGATCCCGAGGTTTACAAGTTTCGGTCCGAGAATGGTGAAGCAAGTTACTGA 582 0.5979 MNTIPMMSLSSSDSDSLALFQHQLTPPAGKRQRGRPAGSKNKPKPNALPTTKPAAADESAKFVLIDVPQGADVIESIVELAQREQVSVTILNGSGAGASVTLQHAPRGSTTFTLHGPFSLVSFSGTFVYGGGDGDSPPPRMDFGVNLSNPEGQIFGGVVRGRVVAGEDVKLTVSTFKDPEVYKFRSENGEASY 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00880 193 SUPERFAMILY AF0104/ALDC/Ptd012-like 61 182 - -
Cca09g00880 193 MobiDBLite consensus disorder prediction 1 21 - -
Cca09g00880 193 Gene3D - 60 190 - -
Cca09g00880 193 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 186 - -
Cca09g00880 193 Pfam Plants and Prokaryotes Conserved (PCC) domain 63 177 IPR005175 -
Cca09g00880 193 MobiDBLite consensus disorder prediction 1 55 - -
Cca09g00880 193 ProSiteProfiles PPC domain profile profile. 57 193 IPR005175 -
Cca09g00880 193 CDD DUF296 62 166 IPR005175 -
Cca09g00880 193 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 186 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00880 Cca-Chr9 25774768 25775575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00880 30 187 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 37.500 2.20e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00880 - - ccaj:109804940 178.333