Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00879 ATGAACACCATTCCCATGATTTCCATCTCCTCCGATGACTCTGACTCCACTCCCTCGTTCCGGCGCCAGCCGCCACCCTCCGGCAAGAAGCAGCGCGGCAGGCCCGCGGGCTCCAAAAACAAGCCCAAGCCCATCACCGCCTCCACAACCGAGCCCACTGCCGCTGAGGAGCCCACCAAGTTCGCCTTCATCCACGTGCCCGAGGGCGAAGACGCCATCGAGTCCATCGTCGAGCTAGCTCGCCGCGAACACGTGAGCGTCACCGTCCTCGGTGGGAGCGGCGCCGTGGCCAGCGTCACACTCAGCCACACGCCAGGTGGCGCCACCGGGTTCACGCTCCATGGACCCTTCTCACTGGTGTCCTTCAGCGGCACCTATGTTTACAGCAACCATTACACCCTTAACCCTGGAGCCTCTCCTCCCCCTCGCATGGCCTTGGCAATCAACCTCTGCACCTCCGAGGGCCAGATCTTCGGCGGCACCGTCGGCGGCAAAGTCATCGCCGCCGAGGACGTCACCCTCACCGTCTCCACCTTCAAGAATCCCGAGGTTTACAAGTTTCACCCTGAAGAGGataacaacaacaacggtaacaataataataataacaatgttaataatGCTGATGGGGGTGCTCATCTGTCAGCGTTCAACACTGTCCCAGTTTGGTGA 672 0.5804 MNTIPMISISSDDSDSTPSFRRQPPPSGKKQRGRPAGSKNKPKPITASTTEPTAAEEPTKFAFIHVPEGEDAIESIVELARREHVSVTVLGGSGAVASVTLSHTPGGATGFTLHGPFSLVSFSGTYVYSNHYTLNPGASPPPRMALAINLCTSEGQIFGGTVGGKVIAAEDVTLTVSTFKNPEVYKFHPEEDNNNNGNNNNNNNVNNADGGAHLSAFNTVPVW 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00879 223 MobiDBLite consensus disorder prediction 1 24 - -
Cca09g00879 223 MobiDBLite consensus disorder prediction 187 213 - -
Cca09g00879 223 MobiDBLite consensus disorder prediction 191 213 - -
Cca09g00879 223 MobiDBLite consensus disorder prediction 1 58 - -
Cca09g00879 223 SUPERFAMILY AF0104/ALDC/Ptd012-like 60 192 - -
Cca09g00879 223 Pfam Plants and Prokaryotes Conserved (PCC) domain 63 180 IPR005175 -
Cca09g00879 223 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 207 - -
Cca09g00879 223 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 207 IPR014476 GO:0003680
Cca09g00879 223 Gene3D - 60 202 - -
Cca09g00879 223 CDD DUF296 64 168 IPR005175 -
Cca09g00879 223 ProSiteProfiles PPC domain profile profile. 56 200 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00879 Cca-Chr9 25763679 25764699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00879 29 196 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 35.955 2.24e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00879 - - ccaj:109804940 227.639