Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00861 ATGCTCTGGCTAAGAGAGGAATCGCGAAGCTCTTTCCCATTCAGGCGAGGAAGGGATCCTTTGGCTTTGGTTTTGGCTCCAACTAGAGAACTTGCACGGCAGCAACAAATGAGGCAACTTAATTATGGTGTAGATATTGCAGTAGGCACACCTGGTCGAATTATTGATCTTCTCAACAGGGGTGCACTGAATTTGAACAGTGTTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGATGTGGAGAAGATCTTGGAGAGGTTGTCTCCAAATCGTCAAACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAATGAGTATTACCCGCAATTATCTAAACAACCCCCTAACCATTGATCTTGTTGGAGATTCGGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCTATTGTGTCTGATCTATACACTAAAGCAGGAATTCTGGCACCTCTGATAACTGAACATGCGAATGGAGGAAAATGTATTGTTTTCACCCAAACCAAACGTGATGCTGATCGATTATCATATATCATGGCAAAAAGCCTTAGATGTGAGGCCTTGCATGGAGATATTTCACAAACTCAGAGGGAAAGGACTCTCGCTGGCTTCAGAAACAACAATTTTAATGTTTTAGTAGCAACTGATGTTGCTTCAGGAGGGCTTGATATTCCAAATGTGGATCTCGTAATACATTATGATCTTCCCAATTCATCAGAGATATTTACTATTGAGCGTGATTTTGGATGCAAATTTACAGAGCTACCAAAGATTGATGTTCCTAGTGGATCAGCAGAGATGTTTGGTGGGATGGGTGGTGGCAATTTTGGCCCTTTTGGAGGTATGAGGGATTGTCAATCTAGAGGTTCAGGTTTTGGTCGCAGTCCTGGATTTAGCTGTTCTGGGAGTTACAGTAACTCTGGATTTGGCCGATCTAACTATGGAAATTCCAGTGGGATGGGAAGGTTTGGAGGACCAAATTCTAGCCTTTTTGGTGGCCCTGGTTCAGGTCAGTTAGGAGGATCTTCTGGTAATTCATCTGGTGAAATGGGTAGATATGATGGCTTTGGTTCAGGTCAAGCAGCAACTCAATTTGGAGGAAACTCTTACCCAGATGGTTTTGGAGGATTTGGTGGTTCAGGTCAAGCAGGAGCTCAATCTGGTGGAAATTCTCATCCAGAAAGTCTAGCCAAAGCAGCAGCTTTGGTGATTCACGTGGTAGTGGTTTCGGTGCTTTTGGTAATGACAATTATAATGGAGGAAAGTCGTTTTAATTTCATCAACTTGGCATCCTGCCAATTCCCCGTATCTCTTGAGATGGAAAAGGTTATGGCATAA 1359 0.4268 MLWLREESRSSFPFRRGRDPLALVLAPTRELARQQQMRQLNYGVDIAVGTPGRIIDLLNRGALNLNSVQFVVLDEADQMLQVGFQEDVEKILERLSPNRQTLMFSATMPSWIMSITRNYLNNPLTIDLVGDSDQKLADGISLYSIVSDLYTKAGILAPLITEHANGGKCIVFTQTKRDADRLSYIMAKSLRCEALHGDISQTQRERTLAGFRNNNFNVLVATDVASGGLDIPNVDLVIHYDLPNSSEIFTIERDFGCKFTELPKIDVPSGSAEMFGGMGGGNFGPFGGMRDCQSRGSGFGRSPGFSCSGSYSNSGFGRSNYGNSSGMGRFGGPNSSLFGGPGSGQLGGSSGNSSGEMGRYDGFGSGQAATQFGGNSYPDGFGGFGGSGQAGAQSGGNSHPESLAKAAALVIHVVVVSVLLVMTIIMEESRFNFINLASCQFPVSLEMEKVMA 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00861 452 SMART helicmild6 180 331 IPR001650 -
Cca09g00861 452 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 250 346 - -
Cca09g00861 452 SMART ultradead3 7 143 IPR014001 -
Cca09g00861 452 Pfam Helicase conserved C-terminal domain 155 247 IPR001650 -
Cca09g00861 452 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 155 253 IPR001650 -
Cca09g00861 452 Gene3D - 142 251 IPR027417 -
Cca09g00861 452 CDD DEADc 13 127 - -
Cca09g00861 452 CDD SF2_C_DEAD 140 250 - -
Cca09g00861 452 Gene3D - 33 130 IPR027417 -
Cca09g00861 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 249 IPR027417 -
Cca09g00861 452 MobiDBLite consensus disorder prediction 338 356 - -
Cca09g00861 452 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 34 249 - -
Cca09g00861 452 MobiDBLite consensus disorder prediction 332 360 - -
Cca09g00861 452 PANTHER RNA HELICASE 250 346 - -
Cca09g00861 452 PANTHER RNA HELICASE 34 249 - -
Cca09g00861 452 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 126 IPR014001 -
Cca09g00861 452 Pfam DEAD/DEAH box helicase 33 111 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00861 Cca-Chr9 25356943 25363948 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00861 17 249 Eukaryotic Initiation Factors Gene Family AT3G19760 31.034 2.82e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00861 - - gmx:100802553 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00861 09 25356943 25363948 Cca09g00861 09 25356943 25363948 ECH