Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00860 ATGAGAGAACCAACAGCACTATGTCGAACCTCCTTCACCTGCGATTggacatacgacgtgttcctgagcttcagaggggtggacacccgcaagagcttcacgggtaatctctacaactctctctgccaaaagggtatccaaaccttcatagacgaaggactcaacagaggagaagagatcatgccagctcttgggcaagccattagagagtcaaggatcttcattgctgtcttctctgagaactatgcctcctcaacgcactgtttgaacgagcttgttaccatcatggagtgcttggaggaacggggaggacgcttgttttggccggtgttctatggagtggatccgtcgcaggttagataccaaagtgggagttatgcagaagctttggaaaaccatgagaatgatgacaaggtcatgaaatggagagaggctttgtctcgagctgctaatatggctggctggcatttccaacatggATCACAATCAGAATCCAAGTTTATTAACAAGATTGTTAAAGAGGTATCTAAACGGATCAATCGCAGTCTTCTACATGTAGCTGACAACCCAGTTGGCCTTGAGTCTCCAGTGCTGCAAGTGACATCTCTCCTCGGACAAGGCTCTGAAGAAGGAGTTAGCATGGTGGGCATTTACGGCACCGGTGGAATAGGTAAATCATCAATTGCTCGTGCTGTGTGCAACTTGCTAGCTTTTCAGTTTGAAGGTTTGTGTTTTCTTTCCAACATAAGAGAAAGGGCCAACAACCACGATCTTGCACAACTTCAAGAAACATTACTTGCTGAAACACTTGGGGAGAAAGATATCAAAGTGGGGGATGTTAACAGAGGAATTCCAATAATAAAAAagaggctccacggtaaaaagatccttttgattcttgatgatgttgacaaggtgaagcagttaaaggtacttgcaggggggcgtgattggtttggctctggcagcaaggtcataatcacaacaagagacaagcatttgttgtgcactcatggggttgttaaatcatatgaagttaaagagttgaatgatgaaaaagcccttgaattgtttagttggcatgccttcagaagtaacaaaattgatccgggttatgcacatgtttcaaaacgggcaatttcctatgctcatggtcttccattggctttggaggtaataggttctcacttgtttggcaaaagtttacatgtgtggacatctgcattagataaatatgaaagaatcattcataaagagatccatgaaacacttaaagttagctatgataacttggaagaagaagagaagggaatttttctcgacattgcttgtttcttcaattctttcgagattggcaatgtcaaagaaatgctaaacttgcatggttttcatgcggaaaatggtattcaggtgctgactgacaaatctctcatgaaaattgatggcaatggctgtgtgagaatgcatgatctaattcaagatatgggaagagaaattgtgaggcaggaatcatctgagcctggcagacgcagtagattgtggTTTAACCAGGATATTGTTCATGTTTTGGAGGAAAATACGGGAACTGATGCAATTGAAGTCATAGTCCTGGACTTGAGTAAAGACAAAAAAGTGCAGTGGAGCGGAAAAGCTTTCAGCCAGATGAAAAACTTGAAAATTCTCATAATCAGAAATGCACACTTTACTAGAGGCCCTAAAAATCTGCCTAATAGTCTGAGAGTGCTATACTGGAGTGGATATCCATCACCATCATTACCATCTAACTTTAATCCCAAGAATCTTGTTATTCTCAGCCTGCCTGAAAGTTGCCTTAAGTCATTCAAATCACTCAAGGTGTTTGAGTCATTGAGCTCACTGGATTTTGAAGGCTGCAAGTTCTTAACTGAACTGCCTAGCTTATCTGGAGTACCAAATTTGACGATATTGTCTCTTAATAACTGCACTGATTTAATTAGAATTCATAGTTCAGTTGGATTTCTTGATAAACTTAAGTTATTGAGAGCTCAAGGATGCACCCAGCTAGAAATTTTGGTACCATTCATCTACTTGACATCTCTAGAGACTCTAGATCTGAGGGATTGCTCACGTCTAAAGAGATTCCCAGAAGTGTTGAGAATGATGGAGAATATAAGAGAGGTTTACCTGGATCATACTAATATAGATGAACTGCCATTTTCGATTGGAAATTTTGTTGGGCTTCGACAATTGTTCTTGAGGGATTGCCAAAGGCTGAACCAGCTACCAAGTACTATTCATATATTGCCACAACTTGAGATATTTACGGCTTATGGTTGTGGTTGTAGGGGATATAGATTTAGATTACCTGAAGAAGAAGTGGAAAAAGTGGCCATGTGGCTTGAGATTTCGAATTTATGCTTTCTAGGGACTTTTATAGGCAGAGTCAATGAGTCATACTCTACCGAACCACTTCGAAGTGGAATGAAGGAAATAATGAGCCAGACAAATGATTGGCAGAAGTGGAACATGCAGATGATACAGCCTTCCCCCTTCATTTTGCCATGGAGGCAGTAA 2553 0.2272 MREPTALCRTSFTCDWTYDVFLSFRGVDTRKSFTGNLYNSLCQKGIQTFIDEGLNRGEEIMPALGQAIRESRIFIAVFSENYASSTHCLNELVTIMECLEERGGRLFWPVFYGVDPSQVRYQSGSYAEALENHENDDKVMKWREALSRAANMAGWHFQHGSQSESKFINKIVKEVSKRINRSLLHVADNPVGLESPVLQVTSLLGQGSEEGVSMVGIYGTGGIGKSSIARAVCNLLAFQFEGLCFLSNIRERANNHDLAQLQETLLAETLGEKDIKVGDVNRGIPIIKKRLHGKKILLILDDVDKVKQLKVLAGGRDWFGSGSKVIITTRDKHLLCTHGVVKSYEVKELNDEKALELFSWHAFRSNKIDPGYAHVSKRAISYAHGLPLALEVIGSHLFGKSLHVWTSALDKYERIIHKEIHETLKVSYDNLEEEEKGIFLDIACFFNSFEIGNVKEMLNLHGFHAENGIQVLTDKSLMKIDGNGCVRMHDLIQDMGREIVRQESSEPGRRSRLWFNQDIVHVLEENTGTDAIEVIVLDLSKDKKVQWSGKAFSQMKNLKILIIRNAHFTRGPKNLPNSLRVLYWSGYPSPSLPSNFNPKNLVILSLPESCLKSFKSLKVFESLSSLDFEGCKFLTELPSLSGVPNLTILSLNNCTDLIRIHSSVGFLDKLKLLRAQGCTQLEILVPFIYLTSLETLDLRDCSRLKRFPEVLRMMENIREVYLDHTNIDELPFSIGNFVGLRQLFLRDCQRLNQLPSTIHILPQLEIFTAYGCGCRGYRFRLPEEEVEKVAMWLEISNLCFLGTFIGRVNESYSTEPLRSGMKEIMSQTNDWQKWNMQMIQPSPFILPWRQ 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00860 850 Gene3D - 348 432 IPR042197 -
Cca09g00860 850 Gene3D Ribonuclease Inhibitor 688 808 IPR032675 -
Cca09g00860 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 442 IPR027417 -
Cca09g00860 850 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 155 IPR035897 -
Cca09g00860 850 Gene3D - 179 342 IPR027417 -
Cca09g00860 850 PRINTS Disease resistance protein signature 688 704 - -
Cca09g00860 850 PRINTS Disease resistance protein signature 214 229 - -
Cca09g00860 850 PRINTS Disease resistance protein signature 290 304 - -
Cca09g00860 850 PRINTS Disease resistance protein signature 383 397 - -
Cca09g00860 850 CDD AAA 217 331 - -
Cca09g00860 850 SUPERFAMILY L domain-like 532 786 - -
Cca09g00860 850 ProSiteProfiles TIR domain profile. 16 179 IPR000157 GO:0007165
Cca09g00860 850 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 28 777 IPR044974 GO:0006952
Cca09g00860 850 SUPERFAMILY "Winged helix" DNA-binding domain 419 524 IPR036390 -
Cca09g00860 850 PANTHER ARCHAEAL ATPASE 28 777 - -
Cca09g00860 850 Gene3D - 13 178 IPR035897 -
Cca09g00860 850 Pfam NB-ARC domain 197 430 IPR002182 GO:0043531
Cca09g00860 850 Pfam TIR domain 18 180 IPR000157 GO:0007165
Cca09g00860 850 SMART till_3 17 152 IPR000157 GO:0007165
Cca09g00860 850 Gene3D Ribonuclease Inhibitor 516 687 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00860 Cca-Chr9 25351978 25356849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00860 12 772 WRKY Transcription Factor Family AT4G12020 32.576 1.61e-100 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00860 - - lja:Lj6g3v0936950.1 1127.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00860 09 25351978 25356849 Cca09g00860 09 25351978 25356849 ECH