Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00857 ATGGGCAACTGTTGCTCTCAAGGCAACGCTGCCGATGGCCCGGAGGACAACATGGCCGCCAATGACAAGGGAGAAACCAACCAACAAGGTAGCAACCATGGCAAAAATGACAACGACAATAATAATGACACCGGGGAcactactacaaccaccccaccatcaacatcagcgccaccaACCTCGGCCTCCCCGCCAGCTACTTCCAAACCCACGAAGCCCTCCGCCATGGGTCCAGTCCTCGAACGGCCCATGGAGGATGTGAGGGCTACGTACACCATTGGGAAGGAGCTGGGGAGAGGCCAGTTTGGTGTGACACATTTGTGCACGGACAAAGCAACGGGGCAGCAATTTGCATGCAAAACAATTGCCAAGAGGAAGCTTGTGAACAAGGAGGACATAGAGGACGTGAGAAGAGAGGTACAAATCATGCACCACCTTTCGGGTCAACCTAACATTGTGGAACTAAAGGGTGCATATGAGGACAAACAATCGGTGCATTTGGTCATGGAGCTTTGTGCGGGTGGTGAACTTTTTGATCGTATCATTGCTAAGGGACACTACACTGAACGTGCTGCGGCTTCCTTGTTGAGAACCATTGTGCAAATTGTTCATACTTTCCATTCCATGGGTGTCATTCATAGAGATCTTAAGCCTGAGAATTTCCTCTTGTTGAGCAAGGATGAAAATGCACCCCTCAAGGCCACGGATTTTGGTCTATCCGTCTTCTTCAAAGAAGGAGAGACGTTCAAAGACATTGTTGGTAGTGCATATTACATTGCTCCCGAGGTTTTGAAGAGGAAATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTCATGCTATACATTCTTCTTTGTGGTGTTCCTCCATTTTGGGCAGAATCCGAACATGGTATATTCAATGCCATCCTAAGAGGCCACATAGATTTTACAAGCGATCCATGGCCTTCAATTTCACCTGCAGCAAAAGATCTTGTGAGGAAAATGTTGAATTCAGACGCCAAACAGAGGCTGACAGCATTCGAAGTTCTAAATCATCCATGGATCATGGAGGATGGAGAAGCACCAGATAAACCACTTGACAATGCTGTGCTGAATAGGCTCAAACAATTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGGTTATTGCCGGATGCCTATCAGAAGAAGAAATCATGGGTTTGAAGGAAATGTTCAGGGGAATGGACACTGACAACAGTGGAACCATTACAATTGAAGAACTCAAGCAAGGGCTTGCAAAGCAAGGGACAAAGCTGACAGAACAAGAAGTTAAGCAATTAATGGAAGCTGCTGATGCTGATGGCAATGGAACCATAGATTACGACGAGTTCATCACGGCAACAATGCAGATGAACCGTTTGAACAGAGAAGAACATCTTTACACTGCCTTCCAATACTTTGATAAAGACAATAGCGGGTTCATTACCATTGAAGAACTAGAACAAGCTCTCCGCGAGTTTAACATGCATGATGGCAGGGACATCAAGGAAATCCTTCAAGAAGTTGATGGAGATAATGATGGTCTCATTAACTATGATGAGTTTACGGCTATGATGAGAAAAGGAAATCCAGAAATTATGACAAAGAAGAGGCGTGATTCAATGCCTTTGTCTTAG 1644 0.4422 MGNCCSQGNAADGPEDNMAANDKGETNQQGSNHGKNDNDNNNDTGDTTTTTPPSTSAPPTSASPPATSKPTKPSAMGPVLERPMEDVRATYTIGKELGRGQFGVTHLCTDKATGQQFACKTIAKRKLVNKEDIEDVRREVQIMHHLSGQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTFHSMGVIHRDLKPENFLLLSKDENAPLKATDFGLSVFFKEGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESEHGIFNAILRGHIDFTSDPWPSISPAAKDLVRKMLNSDAKQRLTAFEVLNHPWIMEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFRGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMQMNRLNREEHLYTAFQYFDKDNSGFITIEELEQALREFNMHDGRDIKEILQEVDGDNDGLINYDEFTAMMRKGNPEIMTKKRRDSMPLS 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00857 547 Gene3D Phosphorylase Kinase; domain 1 92 176 - -
Cca09g00857 547 Gene3D - 357 532 - -
Cca09g00857 547 CDD STKc_CAMK 91 348 - -
Cca09g00857 547 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 36 537 - -
Cca09g00857 547 MobiDBLite consensus disorder prediction 1 83 - -
Cca09g00857 547 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Cca09g00857 547 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Cca09g00857 547 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Cca09g00857 547 PANTHER SERINE/THREONINE-PROTEIN KINASE 36 537 - -
Cca09g00857 547 SMART serkin_6 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00857 547 SMART efh_1 432 460 IPR002048 GO:0005509
Cca09g00857 547 SMART efh_1 503 531 IPR002048 GO:0005509
Cca09g00857 547 SMART efh_1 468 496 IPR002048 GO:0005509
Cca09g00857 547 SMART efh_1 396 424 IPR002048 GO:0005509
Cca09g00857 547 Pfam EF-hand domain pair 466 529 IPR002048 GO:0005509
Cca09g00857 547 Pfam EF-hand domain pair 397 457 IPR002048 GO:0005509
Cca09g00857 547 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Cca09g00857 547 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Cca09g00857 547 Pfam Protein kinase domain 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00857 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Cca09g00857 547 ProSitePatterns Protein kinases ATP-binding region signature. 97 124 IPR017441 GO:0005524
Cca09g00857 547 SUPERFAMILY Protein kinase-like (PK-like) 71 377 IPR011009 -
Cca09g00857 547 Gene3D Transferase(Phosphotransferase) domain 1 177 356 - -
Cca09g00857 547 ProSiteProfiles EF-hand calcium-binding domain profile. 503 534 IPR002048 GO:0005509
Cca09g00857 547 ProSitePatterns EF-hand calcium-binding domain. 512 524 IPR018247 -
Cca09g00857 547 ProSiteProfiles Protein kinase domain profile. 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00857 547 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Cca09g00857 547 MobiDBLite consensus disorder prediction 21 56 - -
Cca09g00857 547 SUPERFAMILY EF-hand 389 530 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00857 Cca-Chr9 25232257 25236711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00857 1 542 EF-hand Containing Proteins AT5G12180 79.558 0.0 890
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Cca09g00857 Pkinase 1.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00857 K13412 - gmx:100781355 967.222