Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00851 ATGGCTTTCACACTAGACAGGTTTGAAGAGAATATGGTATTCACTTTGGAGTCTCAGAAGTCAGTGCCAGCACCCTTTCTGACAAAGACATACCAGCTTGTTGATGACCCTCACACTGACCACATTGTGTCATGGGGTGAAGATGAAACTACATTTGTTGTGTGGAGGCCCCCTGAGTTTGCCAGAGATCTTCTTCCCAACTATTTCAAACACAACAACTTCTCAAGCTTTGTTAGGCAACTCAACACCTATGGTTTCAAGAAGGTAGTTGCTGATAGGTGGGAGTTTGCAAATGAGTACTTCAGAAAAGGAGCTAAGCACCTTTTATGTGAAATCCACAGGAGGAAAACACCTCAACAGCATCACCAACTTTTCCATCATGACCAACAATCACCATCCCAGATTCTTCAGCAAGATGAAAGTCTATGCTGGCTTGACACTCCACTACCATCTCCAAAACCAAGCACAGACATCCTAACAGCACTTTCTGAGGACAACCAAAGACTAAGGAGAAAGAACTTCATGCTCCTATCAGAACTCAGCCACATGAAGAGTTTGTACAATGACATTATATACTTCATCCAAAACCATATAAAACCAGCACCCTTTGAACAAAGAAGCAGCAGTGCTGCTATTGCGAAGCTGGTGGAGTTGGACTCATTGCATGGGTCTCCAATTGACATGGGGGTTCTAAGAAGTTCCAAAAGTTGTATTGTGGATAAATCTTTGATTAGTTCTTATGAGGAATCAAATAGTTCTGTGAAGCTATTTGGGGTCCCTCTAAGTGGCAGAAAGAGATTGCACCCAGATAACACTAATTGA 822 0.4246 MAFTLDRFEENMVFTLESQKSVPAPFLTKTYQLVDDPHTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFRKGAKHLLCEIHRRKTPQQHHQLFHHDQQSPSQILQQDESLCWLDTPLPSPKPSTDILTALSEDNQRLRRKNFMLLSELSHMKSLYNDIIYFIQNHIKPAPFEQRSSSAAIAKLVELDSLHGSPIDMGVLRSSKSCIVDKSLISSYEESNSSVKLFGVPLSGRKRLHPDNTN 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00851 273 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 266 IPR027725 -
Cca09g00851 273 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Cca09g00851 273 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca09g00851 273 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca09g00851 273 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca09g00851 273 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca09g00851 273 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca09g00851 273 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4D 18 266 - -
Cca09g00851 273 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca09g00851 273 Gene3D - 18 117 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00851 Cca-Chr9 25110537 25112378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00851 10 268 HSF AT1G46264 49.675 3.25e-91 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca09g00851 HSF_DNA-bind 9.3e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00851 K09419 - gmx:100806150 503.442