Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00839 ATGAACACCAATCCCATGATGTTCTCCTCCGACACCAATTCCACCGTGTCCTTCCAGTGTCAGCCACCACCATCCGCAAACCACTCCACGATCGCAACCTCATCCAACAGGAATCCACGTGGCAGGCCCATGGGCTCCAAAAACAAGCCCAAGCTCAACATCATGAGCATAACCGAGCCCACTGCCATGCTTAGCCTCATCCATGTGCCCCAGGGCCACGACGTGGTTGAGTCCATCATGGACTATGCTCGTCGTGAACATGCGAACGTGACAATTCTTGGTGGAAGTGGCACCATCGCCAGAGTCACCCTCCACAACACGTCGGGTGGCTCAACCGCGTTGACGCTCCATGGACCCTTCACCTTGGTCTCTTTCACTGGAACATATGTTTACAATGACCGTTATACCCTTAACACTGGAGCCACCCCTCCCCCTCACATGGCCTTCGGAATCAGCCTCTGCACCGCTCGTGGCCAGCTCTTTCAGGGTGCTGTTGGCGGCAAAGTCATCGCCGGCGAGGCTGTTAGCCTCACCGTGTCCACCTTCAGGAATCTGGAGATTTACAAGTGTCATCCTGAGGTGAAGGACAAGGACAAGGACAATGGTGCTAGTAATCTTTGTGGGGTTGTCAATTTGTTGAGCTTCTAG 648 0.5417 MNTNPMMFSSDTNSTVSFQCQPPPSANHSTIATSSNRNPRGRPMGSKNKPKLNIMSITEPTAMLSLIHVPQGHDVVESIMDYARREHANVTILGGSGTIARVTLHNTSGGSTALTLHGPFTLVSFTGTYVYNDRYTLNTGATPPPHMAFGISLCTARGQLFQGAVGGKVIAGEAVSLTVSTFRNLEIYKCHPEVKDKDKDNGASNLCGVVNLLSF 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00839 215 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 20 208 IPR014476 GO:0003680
Cca09g00839 215 SUPERFAMILY AF0104/ALDC/Ptd012-like 67 191 - -
Cca09g00839 215 MobiDBLite consensus disorder prediction 1 51 - -
Cca09g00839 215 CDD DUF296 66 182 IPR005175 -
Cca09g00839 215 Pfam Plants and Prokaryotes Conserved (PCC) domain 67 183 IPR005175 -
Cca09g00839 215 Gene3D - 64 199 - -
Cca09g00839 215 MobiDBLite consensus disorder prediction 1 42 - -
Cca09g00839 215 ProSiteProfiles PPC domain profile profile. 59 209 IPR005175 -
Cca09g00839 215 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 20 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00839 Cca-Chr9 24798032 24798679 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00839 24 197 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 34.831 5.20e-25 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00839 - - ccaj:109804940 335.109