Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00837 ATGAACACCAATCCCATGATGTTCTCCTCCGACACTGATTCCACCGTGTCCTTCCAGTGTCAGCCACCACCATCCGCAAACCATTCCACCACCGCATCCTCATCCAACAGGAATCCACGTGGCAGGCCCTTGGGCTCCAAAAACAAGCCCAAGCCCAACACCATGAGCATAACCGAGCCCAGTGCCAAGATTGCCCTAATCCACGTGCCCCAGGGCCACAACGTGGTTGAGTCCATCATGGACTTTGCTAATCGTGAACATGTCAGCGTGACAATTCTCAGTGGAAGCGGCACCATTGCTAGTGTCACCCTCCACCACCCGTCACGTGACTCAACCGCGTTCACGCTGCATGGGCCTTTTGCCTTGGTCTCTTTCACTGGAACATATGTTTACAATGACCATTATACCCTTAACACTGGAGCCACCCCTCCCCCTCGCATGGCCTTCGGAATCAGCCTCTGCACCGCTCATGGCCAAGTCTTTCAGGGTGTTGTCGGTGGCAAAGTCATTGCTGGCAAGTCCCTTAGCCTCACTGTGTCCACCTACAAGAATCTCGAGATTTACAAGTGTCATCATGAGGTGAAGCAGGACAACAACTAA 600 0.5317 MNTNPMMFSSDTDSTVSFQCQPPPSANHSTTASSSNRNPRGRPLGSKNKPKPNTMSITEPSAKIALIHVPQGHNVVESIMDFANREHVSVTILSGSGTIASVTLHHPSRDSTAFTLHGPFALVSFTGTYVYNDHYTLNTGATPPPRMAFGISLCTAHGQVFQGVVGGKVIAGKSLSLTVSTYKNLEIYKCHHEVKQDNN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00837 199 MobiDBLite consensus disorder prediction 1 56 - -
Cca09g00837 199 Gene3D - 62 197 - -
Cca09g00837 199 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 21 193 IPR014476 GO:0003680
Cca09g00837 199 SUPERFAMILY AF0104/ALDC/Ptd012-like 63 190 - -
Cca09g00837 199 CDD DUF296 66 172 IPR005175 -
Cca09g00837 199 MobiDBLite consensus disorder prediction 1 42 - -
Cca09g00837 199 Pfam Plants and Prokaryotes Conserved (PCC) domain 65 181 IPR005175 -
Cca09g00837 199 ProSiteProfiles PPC domain profile profile. 59 199 IPR005175 -
Cca09g00837 199 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 21 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00837 Cca-Chr9 24779908 24780916 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00837 37 199 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 35.329 9.97e-27 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00837 - - ccaj:109804940 383.259