Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00829 ATGGCCTTTGCTATGGTTGGAGAGGCTCTCATCTCTGCTTCTGTGCAAACCTTGTTGGATAGGATTACTTCTTCAGAGTTTCGAGATTACTTTGCCAACAGAAAGCTCAATGTTTCTCTCTTGGATGAGCTGAGGATAAAGTTGTTGTCACTCAATGCTGTGCTGAATGATGCTGAGGAAAAACAGATCACTGATCTTGCAGTGAGGGCATGGCTTGATGAGCTCAAAGATGCTGTCTTAGATGCTGAGGACTTGTTGGATGAAATCAACACAGATTCTTTGAGGTGCAAGGTAGAGGGAGAATCTAAAACATTCCTTTCTTCCCAGGTCAGATCATTCCTTTCTTCTCCCTTTAATCAATTTTATCGGAGCATCAATTCCAAGCTTGAAGCAATATCTACAAGGCTAGAACATTTTGTGAAACATAAAGATATTATTGGTTTGCAAAGTGTTTCTAGGAGAGTATCTTACAGAACAGTTACAGATTCATTGGTTGAATCTGTTGTTGTTGCAAGGGAGGATGACAAAGAGAAGCTACTGAGAATGCTTCTATCTGATGAAGATGGGAATAACAATCATATAGAAGTGCTGACAATATTGGGCATGGGTGGTCTTGGAAAAACAACCCTAGCTCAATGTCTTTATAATGATAATGCAGTGCAGAAACATTTTGATTTGACAACTTGGGCATGGGTATCTGATGATTTTGATGTGTTTAGAGTTACGAAGACAATTGTTGAATCTGTCACTTCTAAAAAGATTGATAGTATTGATTTAGATACACTTCGGGTTGAATTGAAGAACAACTTAAGAAATAAAAAATTCTTGCTTGTGCTCGATGACCTTTGGAATGAAAAATACAATGACTGGAATCATTTAATAGCACCTTTTACAAGTGGAAAGAAGGGAAGTAAGATCATTGTGACAACCCGACAACATAGAGTTGCACAAATAACACATACATTTCCCATATGTGAGCTGAAACGTCTAACAGATGAAAATTGTTGGTGTATACTTGCAAAACATGCATTTGGAAATGAAGGATTCAACAAATATCCAATGCTAGAAGAAATTGGTAGAAAAATTGCAAGAAAATGCGATGGCCTACCACTAGCAGCTAAAACATTGGGAGGTCTTTTGAGATCAGTTGTTGATGTAGAGGAATGGAATAGAATTTTGAACAGCAATTTATGGGCACGTGATGATGTTACACCTGCTTTACGCATAAGTTATCTTCATCTTCCGGCACATTTGAAAAGATGTTTTGCTTATTGCTCAATTTTTCCCAAACAACATTTGTTGGATAGGAAGGAATTGATTTTGTTATGGATGGCTGAAGGCTTTCTTCAACAAATCCATGGAGAGAAATCATTGGAATCAGTAGGTGATGAATGCTTTAATGAATTGTTATCTAGATCTTTAATTGAAAAAGACAAAGCTAAAGCGGAACAGTTTCGAATGCATGATCTCATCTATGATTTAGCTAAACTAGTATCGGGAAAAAGTTCTTACAACTTTGATGGTGATGAAATCCCAAGAACTGCTCGTCATTTAGCATTTCCTATGAAAGGATTTGATGTCTCTAAAAGATTTGAGGGCTTGTATGAGCTAAAGTTTGTGCGCACCTTTCTACCACAGTGCCCACGTGTATCTCATTATTACTTAACCAAAAAGGTATCACATGGTTGGCTTCCAAAACTAAGATGCTTGCGAACACTGTCATTGTCAAAATACAGAAATATCTCTGAGTTGCCTAATTCAATTGGAAATTTGGTGCTTTTGCGGTATCTTGACCTTTCCTTTACTTCCATCAAAAAATTGCCCGATGCAACCTTTACACTTTACAATTTGCAAACTCTGAAATTAGCAAATTGTAAACATCTTATCCAGCTTCCAGGAGAGATAGCAAATTTGGTCAATCTACATCACCTGGATATTAGGGGCACAAATTTGAATGAGATACCAACACAAATATGCAAATTACAAGATCTTCGTACTTTGACTTCCTTTGTTGTAGGAAGAGAAGATGGATTAAGCATCAAAGAATTAAGAAAATTTATTTTTCTACAAGGTAACCTTTCTATTTTGAAGCTACAAAATATTGTTGATCCCATGGATGCATTTCAAGCCAACATGAAGAAAAAAAAGCAGATTGAGGAGCTTACACTGAAATGGGGAAAAGATCCACAAGATTCAAAAATTGAGAAAGATGTACTTGAGAACCTGCAACCATCAACAAATCTAAAGAAACTCACCATCAGATACTATAGTGGCACAAGCTTTCCAAAATGGCTTAGTGAGTCTTCATATTCTAATGTTATGTTCCTTCATATCAGTTACTGCAAATATTGCTTGTCACTTCCACCATTTGGACAATTACCTTCTCTTAAGGAACTTGTGATTCAACGGATGAAAATGGTGAAGATAGTTGGTGATGAATTCTACTGCAACAACGAAAGGTCCCCTTTCTTTCAACCATTTCCTATGTTGGAGAGTCTCGTGTTTGAAGAGATGTTAGAATGGGAGGAGTGGCTACCATTTGAAGGTGAAAGTAGCGAATTTCCTTTTCCTTTGCTGAAGCATTTGAGTTTATCACAATGTCCAACGTTGAGAGGAAACTTGCCCAGCCATCTTCCTTCATTAAAAGAGGTTAGTATCTCAAAGTGCAACCAATTAGAGGCAAAATCATGTGATCTACACTGGAACACATCAATTGAGTCTTTAAGCATTAGTGAAGGGGGAAAAGGCTTGTTGTCTCTTCTTGACGAATTTTCGTATGAGAAGCTAAATATTTTCATATGGGATAGCTTGTCATGTTTGCCAAGAATGATACTAGGTGCCAGTTGTCTTCAATGGTTGAGTCTTGAGAGTATCCCCTCTTTGATTTCCTTCCCAAATGATGGTTTGCCCACGTCATTGAAATCACTTGATATTAGATGTTGTGAGAACTTAGAATTTTTATCTCATGAAACGTGGCACAAATACACATCACTTGAATCTCTGGAAATTAGGGAGAGTTGTCATTCTCTTACGTTCATTACATTAGATTGTTTCCCTGCTCTTGAATGTCTAGAGATCACCTCGTGTCCCAACTTGGAAGCAATTACTACTCAAGGTGGAGGGGCTGCTCCCAAATTAATAAGTGTTAATGTCGATGATTGTGAGAAACTTGGGTCACTTTTAGAACTGATTGATCTCCCTTCCCTTAAATTCTTAAGGCTCCCTAAGCTTGCAATGGTAGCATCATTAGGTGCAAGGTGTTTTCCTTCAAGTTTAGAATCACTGAAAGTTAATGTTGGAGTGCTATCATGTATGTCTAAAGATGAGTTAGGTTTCCTATTCCAACGCCTCACTTCTCTGTCTTCTCTTTCTATTGAGGGTGGTGGGGAGGCAGATGTTGTTAACATCCTGCTAAAGGAGCCGTTACTGCCCACTTCTCTTCAACGGTTGTACCTTGAGGGTCTTGATGGTTTGAAGTGTTTGGGAATGGAAGGAAAAGGGCTTCAACATCTCACATCTCTCCGGTCTCTGGTCTTAAATTATTTAGTTGAATTGAAGTCGTGGGAAGGGAATGGGCTTCAACATCTCACATCTCTCCAGTCTCTCGGCCTATGCGGTTTAGATAAATTGAAGTTGTGGGAAGGAAATGGGCTTCAACATCTCACTTCTCTCCTAAAGCTTCATATCACTTTTTGTGGAAGCCTTGAGTCCTTGCCAGAAGATCACTTGCCATCCTCTCTTGAATTATTGACTATATACAGATGTCCTTTACTAGAAGAGAGGTATCAAAATCAGAAAGGAAAATATTGGTATAAGATTGCTCACATTCCTGCCATCCAGATAAATATTGATGAAGTGATAATATGA 3867 0.3807 MAFAMVGEALISASVQTLLDRITSSEFRDYFANRKLNVSLLDELRIKLLSLNAVLNDAEEKQITDLAVRAWLDELKDAVLDAEDLLDEINTDSLRCKVEGESKTFLSSQVRSFLSSPFNQFYRSINSKLEAISTRLEHFVKHKDIIGLQSVSRRVSYRTVTDSLVESVVVAREDDKEKLLRMLLSDEDGNNNHIEVLTILGMGGLGKTTLAQCLYNDNAVQKHFDLTTWAWVSDDFDVFRVTKTIVESVTSKKIDSIDLDTLRVELKNNLRNKKFLLVLDDLWNEKYNDWNHLIAPFTSGKKGSKIIVTTRQHRVAQITHTFPICELKRLTDENCWCILAKHAFGNEGFNKYPMLEEIGRKIARKCDGLPLAAKTLGGLLRSVVDVEEWNRILNSNLWARDDVTPALRISYLHLPAHLKRCFAYCSIFPKQHLLDRKELILLWMAEGFLQQIHGEKSLESVGDECFNELLSRSLIEKDKAKAEQFRMHDLIYDLAKLVSGKSSYNFDGDEIPRTARHLAFPMKGFDVSKRFEGLYELKFVRTFLPQCPRVSHYYLTKKVSHGWLPKLRCLRTLSLSKYRNISELPNSIGNLVLLRYLDLSFTSIKKLPDATFTLYNLQTLKLANCKHLIQLPGEIANLVNLHHLDIRGTNLNEIPTQICKLQDLRTLTSFVVGREDGLSIKELRKFIFLQGNLSILKLQNIVDPMDAFQANMKKKKQIEELTLKWGKDPQDSKIEKDVLENLQPSTNLKKLTIRYYSGTSFPKWLSESSYSNVMFLHISYCKYCLSLPPFGQLPSLKELVIQRMKMVKIVGDEFYCNNERSPFFQPFPMLESLVFEEMLEWEEWLPFEGESSEFPFPLLKHLSLSQCPTLRGNLPSHLPSLKEVSISKCNQLEAKSCDLHWNTSIESLSISEGGKGLLSLLDEFSYEKLNIFIWDSLSCLPRMILGASCLQWLSLESIPSLISFPNDGLPTSLKSLDIRCCENLEFLSHETWHKYTSLESLEIRESCHSLTFITLDCFPALECLEITSCPNLEAITTQGGGAAPKLISVNVDDCEKLGSLLELIDLPSLKFLRLPKLAMVASLGARCFPSSLESLKVNVGVLSCMSKDELGFLFQRLTSLSSLSIEGGGEADVVNILLKEPLLPTSLQRLYLEGLDGLKCLGMEGKGLQHLTSLRSLVLNYLVELKSWEGNGLQHLTSLQSLGLCGLDKLKLWEGNGLQHLTSLLKLHITFCGSLESLPEDHLPSSLELLTIYRCPLLEERYQNQKGKYWYKIAHIPAIQINIDEVII 1288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00829 1288 PRINTS Disease resistance protein signature 196 211 - -
Cca09g00829 1288 PRINTS Disease resistance protein signature 269 283 - -
Cca09g00829 1288 PRINTS Disease resistance protein signature 366 380 - -
Cca09g00829 1288 PRINTS Disease resistance protein signature 876 892 - -
Cca09g00829 1288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 425 IPR027417 -
Cca09g00829 1288 SUPERFAMILY L domain-like 936 1274 - -
Cca09g00829 1288 Coils Coil 41 61 - -
Cca09g00829 1288 Pfam NB-ARC domain 173 394 IPR002182 GO:0043531
Cca09g00829 1288 Pfam Leucine rich repeat 594 651 IPR001611 GO:0005515
Cca09g00829 1288 Coils Coil 72 92 - -
Cca09g00829 1288 Pfam Rx N-terminal domain 11 104 IPR041118 -
Cca09g00829 1288 SUPERFAMILY L domain-like 480 912 - -
Cca09g00829 1288 Gene3D Ribonuclease Inhibitor 923 1130 IPR032675 -
Cca09g00829 1288 SMART LRR_typ_2 591 614 IPR003591 -
Cca09g00829 1288 SMART LRR_typ_2 638 661 IPR003591 -
Cca09g00829 1288 Gene3D Ribonuclease Inhibitor 546 922 IPR032675 -
Cca09g00829 1288 CDD RX-CC_like 41 136 IPR038005 -
Cca09g00829 1288 Gene3D - 151 322 IPR027417 -
Cca09g00829 1288 Gene3D Ribonuclease Inhibitor 1134 1265 IPR032675 -
Cca09g00829 1288 PANTHER DISEASE RESISTANCE PROTEIN RP 51 916 IPR044974 GO:0006952
Cca09g00829 1288 Gene3D - 410 497 IPR036388 -
Cca09g00829 1288 Gene3D - 31 135 - -
Cca09g00829 1288 Gene3D - 329 409 IPR042197 -
Cca09g00829 1288 PANTHER - 51 916 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00829 Cca-Chr9 24584480 24588926 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00829 581 676 WRKY Transcription Factor Family AT4G12020 38.144 1.19e-07 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00829 - - ccaj:109804933 2548.08