Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00820 ATGGACTCACAGCACTACCACTCAGAGCACTACCACTATCGCGTTTCAAGGCTGAATGAGGAGCACACGACGCCTATGGCCGGTGACAGCTTCAAATTCAGCATAAGAGTTTCATCATACTCAATGGATGCAGACATGATGAATACAGGCACAGAACGGTTACTGTACTATTCTCCATCTCAATGCATTCCCTGCCATCACTTCTTTCAAGAGGGTCAACACTTCTTGAGCACACTCTTGTCACGGATACACTTCTCCATTAATGATTCTCTTGAGGAATTAGCACGAGGGGTCATGTCAGCTGTTCAAGATTTCTTCCAAGTTGATCAAGTTGCTTCCCCTTCTCCTTCTTTCCAATCTCAACACCGAGAGATCCCTTTACGCTTGGAAATCTTACAGTTGTATGATGGCATTAGTGCAGCAATGGAGGAGTCCATGCAGTGTTTCAAAATGATTCCGGCTTCCAACGAAGCCATCCAAACGTTGTTGAAGAAATCCACGGTTGTGATGGGGAGTGAGGGTTGTCCTATATGCCTTGAGGAGTTGGATGTTAATGCTGAATGCTGCACAATGCCATGCCATCATGTCTTTCATTTACAATGCATTGTCACTTGGCTTAAAACCAGCCATGTGTGTCCCTTGTGTCGTTACCCTTTACCTACCCTCAAGAACTAG 675 0.4533 MDSQHYHSEHYHYRVSRLNEEHTTPMAGDSFKFSIRVSSYSMDADMMNTGTERLLYYSPSQCIPCHHFFQEGQHFLSTLLSRIHFSINDSLEELARGVMSAVQDFFQVDQVASPSPSFQSQHREIPLRLEILQLYDGISAAMEESMQCFKMIPASNEAIQTLLKKSTVVMGSEGCPICLEELDVNAECCTMPCHHVFHLQCIVTWLKTSHVCPLCRYPLPTLKN 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00820 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 222 IPR013083 -
Cca09g00820 224 SMART ring_2 175 215 IPR001841 -
Cca09g00820 224 PANTHER F6A14.12 PROTEIN-RELATED 81 221 - -
Cca09g00820 224 SUPERFAMILY RING/U-box 162 222 - -
Cca09g00820 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 81 221 - -
Cca09g00820 224 ProSiteProfiles Zinc finger RING-type profile. 175 216 IPR001841 -
Cca09g00820 224 Pfam Ring finger domain 175 216 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00820 Cca-Chr9 24491716 24492390 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00820 133 220 C3H Transcription Factor Family AT1G18760 35.556 3.01e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00820 - - ccaj:109804929 291.197