Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00817 ATGGAATCACAGCACTACCACTCAGAGCACTACCACTATCGCGTTTCAAGACATGATGAATACAGGCACAGAACGGTTACTGTACTATTCTCCATCTCAATGCATTCCCTGCCATCACTTCTTTCAAGAGGGTCAACACTTCTTGAGCACACTCTTGTCACGGATACACTTCTCACGACGCTTATGGCCGGTGATAGCTTCAAATTCAGCATTAGAGTTTCATCTTACTCAATGGATGCAGATATGATGAATACAGGCACAGAACGCTTACTATACTATTCATCGCAATGCATACCCTGCCATCACTTCTTTCAAGATGGTCAACACTTCTTGAGCACACTCTTGTCGCGGATACACTTGTCCAATGATTCTCTTCGGGAATTAACACAAGGGGTCATATCCGCTGTTCAAGATTTCTTCCAAGTTGATCAAGTTTCTTCCCCTTGTCCTTCTTTCCAACCTCAACACCGAGAGATCCCTTTACGCGTGGAAATTTTACAGTTGTATGATGGCGTTCGTGCAGCAATGGAGGAGTCCTTGCAGTCTTTCAAAATGATTCCGGCTTCCAACGAAGCCATCCAGACGTTGTTGAAGAAATCCATGGTTATGATAGGGAGTGAGGGTTGTCCTATATGCCTTGAGGAGTTGGATGCCAATGCTGAATGCTACACAATGCCATGCCATCACGTTTTTCATCTACAATGTATCGTGACCTGGCTCCAAACCAGTCATGTGTGTCCCTTGTGTCGATACCCTTTGCCAACCCTCAAGAACTAG 777 0.4505 MESQHYHSEHYHYRVSRHDEYRHRTVTVLFSISMHSLPSLLSRGSTLLEHTLVTDTLLTTLMAGDSFKFSIRVSSYSMDADMMNTGTERLLYYSSQCIPCHHFFQDGQHFLSTLLSRIHLSNDSLRELTQGVISAVQDFFQVDQVSSPCPSFQPQHREIPLRVEILQLYDGVRAAMEESLQSFKMIPASNEAIQTLLKKSMVMIGSEGCPICLEELDANAECYTMPCHHVFHLQCIVTWLQTSHVCPLCRYPLPTLKN 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00817 258 SUPERFAMILY RING/U-box 195 256 - -
Cca09g00817 258 SMART ring_2 209 249 IPR001841 -
Cca09g00817 258 Pfam Ring finger domain 209 250 IPR001841 -
Cca09g00817 258 ProSiteProfiles Zinc finger RING-type profile. 209 250 IPR001841 -
Cca09g00817 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 109 255 - -
Cca09g00817 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 256 IPR013083 -
Cca09g00817 258 PANTHER F6A14.12 PROTEIN-RELATED 109 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00817 Cca-Chr9 24457515 24458374 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00817 167 254 C3H Transcription Factor Family AT1G18760 37.778 8.61e-18 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00817 - - ccaj:109804929 267.7