Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00816 ATGGAATCAGAGCACTACCACTATGGCGTGCAAAGTTTTAATGCTGAGGACACGACCCTTATGGCTGGTGACACCTTCAACTTCAGCGTTAGAGTTTCATCTTACTCAATGGACTCACATGCAGAACGTTTACTATACCAATCTCCATCTCAATGCATACCTTGCCACAGCTTTTTCCATGAGGGTCAACATTTGTTAAGAACACTTTTGTCACCCTTGCACTTGTCCAATGAAACTCTTGGGGAAATAACACAAGGGGCTATAGCCCTTGTTCAAGAAATGTTCCAAGTTGATCGTGAAGTTGTTCTTCCTCCTCCTCCTTTGGAATCTCAACACCGAGAGATCTCTTTATGCTTGGAAATTCTACGAATAgatgatgatgatgatggtgatgatgttggtgCAGTGTTGGAGGAGTCCATGCAGTGTTTCAGAATGGTTCCTGCGTCCAATGAAGCCATTAAGACATCGTTGAAGAAATCCACGGTTATGGTTGAGGGTGAGGGTTGTTCTATATGCCTTGAAGAGATGGATGTCAATGATGAATGCTACACAATGCCATGCCATCATGGCTTTCATCCACAGTGTATTGTCACTTGGCTTAAAACTAGTCATATGTGTCCCTTGTGTCGCTTCCCTTTGCCAACCCTCAAGAACTAG 660 0.4167 MESEHYHYGVQSFNAEDTTLMAGDTFNFSVRVSSYSMDSHAERLLYQSPSQCIPCHSFFHEGQHLLRTLLSPLHLSNETLGEITQGAIALVQEMFQVDREVVLPPPPLESQHREISLCLEILRIDDDDDGDDVGAVLEESMQCFRMVPASNEAIKTSLKKSTVMVEGEGCSICLEEMDVNDECYTMPCHHGFHPQCIVTWLKTSHMCPLCRFPLPTLKN 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00816 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 217 IPR013083 -
Cca09g00816 219 SUPERFAMILY RING/U-box 159 217 - -
Cca09g00816 219 SMART ring_2 170 210 IPR001841 -
Cca09g00816 219 ProSiteProfiles Zinc finger RING-type profile. 170 211 IPR001841 -
Cca09g00816 219 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 128 216 - -
Cca09g00816 219 Pfam Ring finger domain 170 211 IPR001841 -
Cca09g00816 219 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 128 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00816 Cca-Chr9 24450247 24450906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00816 133 215 C3H Transcription Factor Family AT1G18760 38.824 2.32e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00816 - - ccaj:109804929 444.891