LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g00808	ATGGACACGTTGTTCCTTGTGAAGGAAATTGCTGTGTCCATTTTGATCTTCTTCATCACTCGTTTCTCCCTTCGTTCGGTTTTCAAGAGCCATGGACGAAAGCTTCCACCGGGGCCACGAGGGTGGCCTGTGCTAGGAGCACTTCCTCTGATGGGAAGCATGCCTCACGTGACCTTAGCCAACATGGCAAAAAAATATGGACCTGTTATGTACCTCAAAATGGGAACTAACAACATGGTTGTCGCTTCTACTCCTGCTGCAGCCCGTGCTTTCCTCAAAACCCTAGACCAGAACTTCTCCAATAGGCCTCCCAATGCTGGTGCAACCCACTTGGCTTATGGTGCTCAGGATTTGGTGTTTGCTCCATACGGATCTAAGTGGAAGTTGCTTAGGAAACTAAGCAACTTACACATGCTTGGAGGAAAGGCTCTGGATGATTGGGGTCCAATTAGAGAGGAAGAAATGGGGTACATGCTTCGTGCAATGTATGATTCTAGCAAGAGGGGTGAGGCTGTGGTTGTGGCTGAGATGTTGACATACTCTATGGCTAACATGATTGGCCAAATCATACTGAGTCGTCGCGTGTTTGAGACCAAGGGTTCCGAGTCAAACGAGTTCAAGGACATGGTGGTTGAGCTCATGACCGTGGCGGGGTACTTCAACATTGGTGACTTCATACCCTTTTTGGCCAAGTTGGACTTGCAAGGCATAGAGCGTGGGATGAAGCAATTGCACAAGAAGTTTGATGCGTTGTTGACCAGGATGTTTGAGGAGCATGTGGCTTCCAGACATAAGAGAAAGGGAAAACCTGATTTCTTGGACATGGTCATGGATCATCATGGTGAAGACGCCGATGGGGAGAAACTCACTCTCACCAACATCAAAGCTCTACTCTTGAACCTGTTCACAGCAGGAACAGACACATCGTCGAGCATAATAGAGTGGGCCCTAGCGGAGATGGTGAAGAACCCAAGGATCATGAAGAGGGCCCAGGAAGAGATGGACGCAGTGATAGGGCGCGATCGGCGTCTCAGAGAAACAGACATAGCAAAGCTTCCATACTTCCAAGCCATATGCAAGGAAACCTACCGCAAGCACCCTTCCACCCCTCTGAACCTGCCACGTGTCTCGGCCCAGGCCTGCCACGTGAACGGGTTCTACATCCCGGCGAACACTCGGCTGAGCGTGAACATCTGGGCCATAGGGCGGGACCCGCAGGTGTGGGAGCAGCCCTTGGAGTTCAGGCCCGAGAGGTTTCTGAGCGGGCCCAACGCGAAGATCGACCCACGCGGGAACGACTTCGAGCTGATTCCGTTCGGCGCTGGGCGGAGAATCTGCGCGGGGACGAGGATGGGCATTGCGCTGGTGCACTACATTTTGGGGACTTTGGTTCATTCCTTTGAGTGGAAGGTGCCGAGTGAGGTTGGGGAGTTGAACATGGAGGAGGCCTTTGGGCTTGCCTTGCAGAAGAAGGTCCCACTCGCTGCTTTGGTTAGCCCTAGGTTGACCTCAAGTGCTTATATTCCTTAG	1530	0.5203	MDTLFLVKEIAVSILIFFITRFSLRSVFKSHGRKLPPGPRGWPVLGALPLMGSMPHVTLANMAKKYGPVMYLKMGTNNMVVASTPAAARAFLKTLDQNFSNRPPNAGATHLAYGAQDLVFAPYGSKWKLLRKLSNLHMLGGKALDDWGPIREEEMGYMLRAMYDSSKRGEAVVVAEMLTYSMANMIGQIILSRRVFETKGSESNEFKDMVVELMTVAGYFNIGDFIPFLAKLDLQGIERGMKQLHKKFDALLTRMFEEHVASRHKRKGKPDFLDMVMDHHGEDADGEKLTLTNIKALLLNLFTAGTDTSSSIIEWALAEMVKNPRIMKRAQEEMDAVIGRDRRLRETDIAKLPYFQAICKETYRKHPSTPLNLPRVSAQACHVNGFYIPANTRLSVNIWAIGRDPQVWEQPLEFRPERFLSGPNAKIDPRGNDFELIPFGAGRRICAGTRMGIALVHYILGTLVHSFEWKVPSEVGELNMEEAFGLALQKKVPLAALVSPRLTSSAYIP	509

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g00808	509	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	439	448	IPR017972	GO:0005506\|GO:0016705
	Cca09g00808	509	Gene3D	Cytochrome P450	25	497	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca09g00808	509	Pfam	Cytochrome P450	36	491	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca09g00808	509	PRINTS	E-class P450 group I signature	63	82	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca09g00808	509	PRINTS	E-class P450 group I signature	87	108	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca09g00808	509	PRINTS	E-class P450 group I signature	181	199	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca09g00808	509	PRINTS	E-class P450 group I signature	293	310	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca09g00808	509	PRINTS	E-class P450 group I signature	313	339	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca09g00808	509	PRINTS	E-class P450 group I signature	356	374	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca09g00808	509	PRINTS	E-class P450 group I signature	397	421	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g00808	Cca-Chr9	24155866	24159057	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g00808	1	507	Cytochrome P450	AT5G07990	47.173	4.39e-178	508

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g00808	K13083		-	gmx:547705	880.552

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