Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00798 ATGTCAGGTGGAGCAACATACTGGTGTTACACATGCAGGCAACCAATCTGGCTCACAGGGAGGGATGTGATTTGCCCTTACTGCAGTGAAGGCTTTGTGCAAGAACTTAACGAGAGGCGAAGAGTTGCACGCGAACATGGCCACTCATCACAGTTGGAAGAGTTTCATCAAATGCCTGACATTATGGATGCTATACAAGCTGTTATGGAGCAAAGAGGTTCCGAATCAAGAATTGGTGTTAGAGATGCTGTTGATAATTTCATGAGGCAGAGAATGGCTGGAAGATACACAAACTTTGATGTTAGAAGGAGGTCTGGTTCTGCCTTACTTCCTGAACAAACTTGGGGTGTCTTTAGTTCTGGTCCTTATTTGATATTTCATGGTCAAGCTCCAGGGTTCACTTTCTCTAACAGTGGCTCAAGAGGTGGTCCTAGGCGTGTTGATTTTGGTGACTACTTTTTGGGCCCTAGACTTGAAGGACTCATTGAACAACACATTACAAATGACAGGCTTGGTCCACCGCCTGCGTCACGGTCCTCAATTGATGCAATGCCAACTATTACGATCACACATGAACACCTCCAATCTGATTCACACTGTCCAGTTTGTAAAGAAAGATTTGAAGTGGGTTCTGAAGCCAGGAAAATGCCATGTAACCACATTTACCACTCAGACTGCATTGTTCCATGGTTGGTTCAGCATAACTCATGTCCTGTTTGTCGTGTTGAGCTGCCACCTCAAGGACATGCTAGTTCCCGGGGTAGTCGAATTTGGGGACGAAGGAATGTTACTGGTAGTAATGGTGGTGACAATGATATCTCCAGGGGTAGGGAAAATAGGCAGTTGAACAATGGAAGGAGAAATCTACTGTCATTTTTGTGGCCATTCCGTTCTTCTAGTTCTAATACTTGA 912 0.4485 MSGGATYWCYTCRQPIWLTGRDVICPYCSEGFVQELNERRRVAREHGHSSQLEEFHQMPDIMDAIQAVMEQRGSESRIGVRDAVDNFMRQRMAGRYTNFDVRRRSGSALLPEQTWGVFSSGPYLIFHGQAPGFTFSNSGSRGGPRRVDFGDYFLGPRLEGLIEQHITNDRLGPPPASRSSIDAMPTITITHEHLQSDSHCPVCKERFEVGSEARKMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGHASSRGSRIWGRRNVTGSNGGDNDISRGRENRQLNNGRRNLLSFLWPFRSSSSNT 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00798 303 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 1 302 - -
Cca09g00798 303 SUPERFAMILY RING/U-box 180 247 - -
Cca09g00798 303 MobiDBLite consensus disorder prediction 257 272 - -
Cca09g00798 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 247 IPR013083 -
Cca09g00798 303 SMART ring_2 200 240 IPR001841 -
Cca09g00798 303 MobiDBLite consensus disorder prediction 247 281 - -
Cca09g00798 303 CDD RING-H2_RNF126_like 200 241 - -
Cca09g00798 303 Pfam Ring finger domain 199 241 IPR001841 -
Cca09g00798 303 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Cca09g00798 303 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Cca09g00798 303 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00798 Cca-Chr9 23860965 23863521 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00798 170 297 C3H Transcription Factor Family AT1G68180 40.625 1.32e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00798 K11982 - ccaj:109790507 629.017