Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca09g00798 | ATGTCAGGTGGAGCAACATACTGGTGTTACACATGCAGGCAACCAATCTGGCTCACAGGGAGGGATGTGATTTGCCCTTACTGCAGTGAAGGCTTTGTGCAAGAACTTAACGAGAGGCGAAGAGTTGCACGCGAACATGGCCACTCATCACAGTTGGAAGAGTTTCATCAAATGCCTGACATTATGGATGCTATACAAGCTGTTATGGAGCAAAGAGGTTCCGAATCAAGAATTGGTGTTAGAGATGCTGTTGATAATTTCATGAGGCAGAGAATGGCTGGAAGATACACAAACTTTGATGTTAGAAGGAGGTCTGGTTCTGCCTTACTTCCTGAACAAACTTGGGGTGTCTTTAGTTCTGGTCCTTATTTGATATTTCATGGTCAAGCTCCAGGGTTCACTTTCTCTAACAGTGGCTCAAGAGGTGGTCCTAGGCGTGTTGATTTTGGTGACTACTTTTTGGGCCCTAGACTTGAAGGACTCATTGAACAACACATTACAAATGACAGGCTTGGTCCACCGCCTGCGTCACGGTCCTCAATTGATGCAATGCCAACTATTACGATCACACATGAACACCTCCAATCTGATTCACACTGTCCAGTTTGTAAAGAAAGATTTGAAGTGGGTTCTGAAGCCAGGAAAATGCCATGTAACCACATTTACCACTCAGACTGCATTGTTCCATGGTTGGTTCAGCATAACTCATGTCCTGTTTGTCGTGTTGAGCTGCCACCTCAAGGACATGCTAGTTCCCGGGGTAGTCGAATTTGGGGACGAAGGAATGTTACTGGTAGTAATGGTGGTGACAATGATATCTCCAGGGGTAGGGAAAATAGGCAGTTGAACAATGGAAGGAGAAATCTACTGTCATTTTTGTGGCCATTCCGTTCTTCTAGTTCTAATACTTGA | 912 | 0.4485 | MSGGATYWCYTCRQPIWLTGRDVICPYCSEGFVQELNERRRVAREHGHSSQLEEFHQMPDIMDAIQAVMEQRGSESRIGVRDAVDNFMRQRMAGRYTNFDVRRRSGSALLPEQTWGVFSSGPYLIFHGQAPGFTFSNSGSRGGPRRVDFGDYFLGPRLEGLIEQHITNDRLGPPPASRSSIDAMPTITITHEHLQSDSHCPVCKERFEVGSEARKMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGHASSRGSRIWGRRNVTGSNGGDNDISRGRENRQLNNGRRNLLSFLWPFRSSSSNT | 303 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca09g00798 | 303 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED | 1 | 302 | - | - | |
Cca09g00798 | 303 | SUPERFAMILY | RING/U-box | 180 | 247 | - | - | |
Cca09g00798 | 303 | MobiDBLite | consensus disorder prediction | 257 | 272 | - | - | |
Cca09g00798 | 303 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 163 | 247 | IPR013083 | - | |
Cca09g00798 | 303 | SMART | ring_2 | 200 | 240 | IPR001841 | - | |
Cca09g00798 | 303 | MobiDBLite | consensus disorder prediction | 247 | 281 | - | - | |
Cca09g00798 | 303 | CDD | RING-H2_RNF126_like | 200 | 241 | - | - | |
Cca09g00798 | 303 | Pfam | Ring finger domain | 199 | 241 | IPR001841 | - | |
Cca09g00798 | 303 | Pfam | zinc-ribbon | 6 | 36 | IPR039525 | GO:0061630 | |
Cca09g00798 | 303 | ProSiteProfiles | Zinc finger RING-type profile. | 200 | 241 | IPR001841 | - | |
Cca09g00798 | 303 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 1 | 302 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca09g00798 | Cca-Chr9 | 23860965 | 23863521 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca09g00798 | 170 | 297 | C3H Transcription Factor Family | AT1G68180 | 40.625 | 1.32e-25 | 100 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca09g00798 | K11982 | - | ccaj:109790507 | 629.017 |