Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00796 ATGGCCGTTACCTTCTCAAATCTCCACACTGACTCAGGTCTCAAGTCTCTCGACGACTTCCTATCTGGGAAGACCTATGTTTCTGGGGATCAGTTCACAAAGGATGACATCAAAGTGTATGCTGCTGTTTTGGAGAAGCCGGGTGATGCTTTCCCCAGTGTTGCCAAGTGGTACGAGGTTGTCTCGTCTCACCTTGCTGCAAGCTTCCCTGGCAATGCACAAGGGGTGAGATTCAGTGGCAAAGCTCCTGCTCCAGCTGAGGCTGCTCCTGCAAAACCGGCTGCTGAAGATGATGATGACCTTGATCTCTTTGGCGATGAGACAGAGGAAGACAAGAAGGCGGCAGAGGAAAGGGAGGCTGCTAAGAAGCCTGCCAAGAAGAAAGAGAGTGGCAAGTCTTCTGTTCTGCTCGATGTCAAGCCTTGGGATGATGAGACAGACATGAAGAAGCTGGAGGAGGCTGTTCGTAGTGTTGAGATGCCTGGTCTATTGTGGGGAGCATCCAAACTGGTTCCTGTGGGTTATGGAATCAAGAAGTTGCAGATCATGTTGACCATTGTTGATGATCTAGTATCTGTGGACTCACTTATTGAGGAGCATCTGACAGTTGAGCCTGTCAACGAGTATGTCCAAAGCTGTGACATTGTGGCATTCAACAAAATTTAA 666 0.4895 MAVTFSNLHTDSGLKSLDDFLSGKTYVSGDQFTKDDIKVYAAVLEKPGDAFPSVAKWYEVVSSHLAASFPGNAQGVRFSGKAPAPAEAAPAKPAAEDDDDLDLFGDETEEDKKAAEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVEMPGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTVEPVNEYVQSCDIVAFNKI 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00796 221 CDD EF1B 130 221 IPR014038 GO:0003746|GO:0006414
Cca09g00796 221 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 210 221 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cca09g00796 221 SUPERFAMILY GST C-terminal domain-like 10 66 IPR036282 -
Cca09g00796 221 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 97 105 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cca09g00796 221 Pfam EF-1 guanine nucleotide exchange domain 134 221 IPR014038 GO:0003746|GO:0006414
Cca09g00796 221 PANTHER TRANSLATION ELONGATION FACTOR EF1B/RIBOSOMAL PROTEIN S6-RELATED 1 221 - -
Cca09g00796 221 Gene3D - 125 221 IPR014717 -
Cca09g00796 221 SMART EF1_GNE_2 132 221 IPR014038 GO:0003746|GO:0006414
Cca09g00796 221 SUPERFAMILY eEF-1beta-like 129 221 IPR036219 -
Cca09g00796 221 MobiDBLite consensus disorder prediction 107 129 - -
Cca09g00796 221 Gene3D - 5 63 - -
Cca09g00796 221 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 221 - -
Cca09g00796 221 MobiDBLite consensus disorder prediction 78 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00796 Cca-Chr9 23747889 23751978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00796 1 221 Eukaryotic Initiation Factors Gene Family AT5G12110 72.807 1.90e-107 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00796 K03232 - gmx:100306132 328.946