Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00794 ATGGATCCTAACGAAATTGATAAATGCAAGCAATCAGTTTCGGATGATCACGATGACTGGGAATCTTGCAAGAAAGAGAAGATGAAGAGATCTCATATTGGGTGTAGCAAAGCTGAAGCTGAACCCATGACTGATGAAGCAATTGCAGTGAAAATCGCATCGCCAACAATGCGCGAGTGTGATATTTGCGGCAAGATTTTCAGCAGCGGCAAGGCTTTGGGTGGCCACAGAAGATCCCACTTTCAGAAGCACCAAAAGAAGGTAAAAGTCCGTTTCACTAATCCCTCAAAAGCTGGTGATAGTAGCAACACTAGGGCTAATTGTGATGATGATGACGACGACACCAACGATGACAAGAACATTTGTTGTATTTGCAAGAAGGAATTCCCTACCAAGAATGCCTTGTTTGGGCACATGAGATCTCACCCTGAGAGGTCATGGAGAGGTGTGTCCCCTCCTACTCATAACAAGCACTCATCttcttcatctccatcttattcttattcttcccataattctgattctATGGAGAAAACTATGAAAGATCatgattatgacgatggtgatggtaatggagatggtgatgattgtgttggtggtgGTAATACATTGATTGCCCCAGATGAACATGATCACACTGAAGCCATTGATCTTTCAAGCTTTATTTTATCCACATGGCAAAAGAAAGATAAAAGAGGGAGAAAATGTATTGGTGGTATTGAAGCTGCTGAAACCCTTGTCTACCTTTGCACTCATGCTAGGTACTTTAGTGCTGATCATGAGTCCAATAGGGTTAATGTTGCACCTAAGGAAGACGTGCTGCCAAAGAGTGCTCCACCTCTAACCAAGCATGACAAAAGGAAGGTTGATGAATCTTCATCAAGCAAGAAGGCTGAGGTGAAGAGGATAAAGCTTTTACTGAAGGTGGGGAACAGAAgtgatggagctggtgcatgtggtgatgatggtggtggtAAGCTCAACAGGTGCGAGGGTTTATCTGAATCTGGGGTTGAGAGAATGGTGgatgatgatgtggatgaggctcttgatgatgtgatgaatgatgctgaGGTAACTCCTGTGACTGTGACTACTAGGGTGCAAGATCATGATGAAAGGAATAATAATAAGGTGAAAAAGGTGGAGAAAGGGAAGAGTGGTAAGAAATTGGTGCTGAAATCAAAGGGAAAAGACCATGAATATGAGAATGTGGGAAGTCAAGAGAAAGTGGGTGGATATAAATGTGGGGCATGTGGGAAAGTTTTCTCAACTTTCCAAGGTTTAGGGGGACACAGATCAGTGCATAAGGAGAAAAACATTGTACCAATCATAGATGAGCCAAACCAACCAGATGATGCTGTTGTAGCTGAAGAAAACAATTCTAGCACCTCAAGTAATGTGCACAAGATGGATGAGGCATTGTTGAAGGAAGAAACAATAGCAGCAGATGAGGCAGGTCAATCTTCAGGTACCAAAACATTGGACTTCGACCTCAATGAGCCCTATGTTATGGAGGATTAA 1524 0.3766 MDPNEIDKCKQSVSDDHDDWESCKKEKMKRSHIGCSKAEAEPMTDEAIAVKIASPTMRECDICGKIFSSGKALGGHRRSHFQKHQKKVKVRFTNPSKAGDSSNTRANCDDDDDDTNDDKNICCICKKEFPTKNALFGHMRSHPERSWRGVSPPTHNKHSSSSSPSYSYSSHNSDSMEKTMKDHDYDDGDGNGDGDDCVGGGNTLIAPDEHDHTEAIDLSSFILSTWQKKDKRGRKCIGGIEAAETLVYLCTHARYFSADHESNRVNVAPKEDVLPKSAPPLTKHDKRKVDESSSSKKAEVKRIKLLLKVGNRSDGAGACGDDGGGKLNRCEGLSESGVERMVDDDVDEALDDVMNDAEVTPVTVTTRVQDHDERNNNKVKKVEKGKSGKKLVLKSKGKDHEYENVGSQEKVGGYKCGACGKVFSTFQGLGGHRSVHKEKNIVPIIDEPNQPDDAVVAEENNSSTSSNVHKMDEALLKEETIAADEAGQSSGTKTLDFDLNEPYVMED 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00794 507 ProSitePatterns Zinc finger C2H2 type domain signature. 416 436 IPR013087 -
Cca09g00794 507 Gene3D Classic Zinc Finger 59 142 - -
Cca09g00794 507 PANTHER ZINC FINGER PROTEIN ZAT4-LIKE 8 478 - -
Cca09g00794 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 142 IPR013087 -
Cca09g00794 507 MobiDBLite consensus disorder prediction 267 296 - -
Cca09g00794 507 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 8 478 IPR044653 GO:0003700
Cca09g00794 507 MobiDBLite consensus disorder prediction 76 115 - -
Cca09g00794 507 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Cca09g00794 507 MobiDBLite consensus disorder prediction 143 196 - -
Cca09g00794 507 MobiDBLite consensus disorder prediction 1 23 - -
Cca09g00794 507 SUPERFAMILY beta-beta-alpha zinc fingers 413 440 IPR036236 -
Cca09g00794 507 MobiDBLite consensus disorder prediction 152 174 - -
Cca09g00794 507 MobiDBLite consensus disorder prediction 76 91 - -
Cca09g00794 507 SMART c2h2final6 120 142 IPR013087 -
Cca09g00794 507 SMART c2h2final6 58 80 IPR013087 -
Cca09g00794 507 SMART c2h2final6 414 436 IPR013087 -
Cca09g00794 507 Pfam C2H2-type zinc finger 121 144 - -
Cca09g00794 507 Pfam C2H2-type zinc finger 59 80 - -
Cca09g00794 507 Pfam C2H2-type zinc finger 414 438 - -
Cca09g00794 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 414 441 IPR013087 -
Cca09g00794 507 MobiDBLite consensus disorder prediction 277 296 - -
Cca09g00794 507 Coils Coil 505 507 - -
Cca09g00794 507 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
Cca09g00794 507 MobiDBLite consensus disorder prediction 482 507 - -
Cca09g00794 507 SUPERFAMILY beta-beta-alpha zinc fingers 59 142 IPR036236 -
Cca09g00794 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00794 Cca-Chr9 23634671 23636194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00794 60 153 C2H2 Transcription Factor Family AT2G26940 39.216 2.61e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca09g00794 zf-C2H2_6 3.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00794 - - ccaj:109790235 939.873