Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00785 ATGAGTAGCATGACAAGTGGGGGTGATACTCGGAAAATATCCAAAGGTCGCCAGTCATCATCATTAGTTGAAGAAGATGGTGATGGAGAAAACGTGGGAGAAGGTCCTCTAAAGAAAGGCCCATGGACTTCAGCAGAGGATGCAATTTTGATAGAATATGTCAAAAAGCACGGACAAGGCAATTGGAATGCAGTCCAAAAGTATTCAGGACTTGCTCGTTGTGGGAAAAGCTGCCGTCTACGGTGGGCAAACCATTTAAGACCAGATCTGAAAAAAGGAGCATTTACTGCAGAGGAAGAGAGCCGAATCATTGAGCTCCATTCTAAGATGGGAAACAAATGGGCTCGAATGGCTGCAGAGTTGCCTGGACGAACCGATAATGAGATCAAGAACTACTGGAACACAAGAATCAAAAGAATGCAACGAGCTGGCTTACCAATCTACCCTGATGAAGTGTACCAACGGATACACAATGCCAATCAAGAAAGTCAAAATGTTGGCACCTTGACAAATGAAGCGTCCCAGCATGATGATCTCTCGCAAACTGACAATTTTGATATACAAGATGGGGAATTCAAAAATTTCAAATTCTGTCCTGGTCTATCACATGGACCATCAATTTTTGATATGCCTCAAAGCAGCTTGTTTGAACAAAGTTCGGACACATCCCATACTTATAACATCTTGTTCCCAACTATGCATCCCTCGAAACGCCGCCGGGAGTCAGAAATTTTATACAATAGTTTTGACAGCTGTACAAGTAATGCTGTCCCAGTACTTGACCCTTATGGCAATTATAATTGTGAGAGATTTTCTGACCATAATAGGTTGTGTCTTCCATGTGATCCTTTTCTTAACACCAGTGATCAGTTTCATGGTGATAACCTTACTGGCAGCCATGCCGCATTAAATGGCAATGCCTCTTCTTCTGGGCCCATATTTGGGTCCATGAAGTTGGAGCTCCCTTCACTCCAATATCCTGAAACTCAACATGGTAGCTGGGGGATGTATACACCTACGTCCCCGCTTCCTTCACTTGAGTCTGTTGATACACTAATTCAGTCTCCTCTAGTTGAGCCTATTCTGTCAGATCCTGTTTCTCCACAAAGCTGTGGTTTGCTAGAAGCAATAGTCTACAACTCAAATACCTTGAAAGGCTCACGGAATGATTCGTTATTGCCAGAGACAACTGATACGCCCTACCAAGCAATCAACAATTCAATCTTGAATCTTCCCTTTAAGACAGAATGGGATGAACAAGAGGAGCCAAATTCCTCCTTAGGCCAATCTGCTGCTTCCGTTCTGACTGACTATACTCCAGTAAGCATAAGCTCAGTGGATGGCCCTCAATCAGTCGAAACCACCCAGGATCATGATGATAAGCATGGAGCACTCAACCAGTTCCCAGATAGTTCTGGGAAGAAAGAAAATTTGAATCAGATAGAGTTTACGCGGCCCGATGCTTTACTTGACTTAGGTTGGTTTGGAAATAACACCGAGTATGGTAGTGATCAATCTGTTCTAAAAGATGCTTTAAGTGCACTTCTTGGTGAAGATTTCCAGGGTGAGCAGTAG 1575 0.4337 MSSMTSGGDTRKISKGRQSSSLVEEDGDGENVGEGPLKKGPWTSAEDAILIEYVKKHGQGNWNAVQKYSGLARCGKSCRLRWANHLRPDLKKGAFTAEEESRIIELHSKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPDEVYQRIHNANQESQNVGTLTNEASQHDDLSQTDNFDIQDGEFKNFKFCPGLSHGPSIFDMPQSSLFEQSSDTSHTYNILFPTMHPSKRRRESEILYNSFDSCTSNAVPVLDPYGNYNCERFSDHNRLCLPCDPFLNTSDQFHGDNLTGSHAALNGNASSSGPIFGSMKLELPSLQYPETQHGSWGMYTPTSPLPSLESVDTLIQSPLVEPILSDPVSPQSCGLLEAIVYNSNTLKGSRNDSLLPETTDTPYQAINNSILNLPFKTEWDEQEEPNSSLGQSAASVLTDYTPVSISSVDGPQSVETTQDHDDKHGALNQFPDSSGKKENLNQIEFTRPDALLDLGWFGNNTEYGSDQSVLKDALSALLGEDFQGEQ 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00785 524 MobiDBLite consensus disorder prediction 1 40 - -
Cca09g00785 524 MobiDBLite consensus disorder prediction 444 476 - -
Cca09g00785 524 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Cca09g00785 524 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Cca09g00785 524 SMART sant 38 88 IPR001005 -
Cca09g00785 524 SMART sant 91 139 IPR001005 -
Cca09g00785 524 SUPERFAMILY Homeodomain-like 37 133 IPR009057 -
Cca09g00785 524 Pfam Myb-like DNA-binding domain 42 102 - -
Cca09g00785 524 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 86 IPR017930 -
Cca09g00785 524 ProSiteProfiles Myb-like domain profile. 34 86 IPR001005 -
Cca09g00785 524 Gene3D - 94 175 - -
Cca09g00785 524 CDD SANT 41 86 IPR001005 -
Cca09g00785 524 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 522 - -
Cca09g00785 524 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 522 - -
Cca09g00785 524 MobiDBLite consensus disorder prediction 1 17 - -
Cca09g00785 524 Gene3D - 38 91 - -
Cca09g00785 524 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00785 Cca-Chr9 23430820 23435830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00785 37 520 MYB Transcription Factor Family AT3G11440 38.767 9.67e-89 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca09g00785 Myb_DNA-bind_6 3.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00785 K09422 - gmx:100800658 818.535