Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00778 ATGAATTGGATGTTAGACATAATTGAAGGGGAAGTAACAAATAATTGGATTGAGCTTTTTGATGATGTTGCACCATTGCCGGAAATCAAATTGGAAGATATTTGGAAGAATGAGGAGGGGTCGGATGTTACTTTCCCTGTAGGTGGAGAAAGGTTTCATGTGCATAAGCTTGTTTTGGCTGCCCGGTCAACTGCATTTGAAACCGAGTTTTTTAATGGGATGGAGGAAGATGATCGTGACATAGTTGTTAGTGATATGGAACCTAAGGTTTTCAAGGCTTTGCTTCATTTTATTTATAGACTTTCTTATTGA 312 0.3814 MNWMLDIIEGEVTNNWIELFDDVAPLPEIKLEDIWKNEEGSDVTFPVGGERFHVHKLVLAARSTAFETEFFNGMEEDDRDIVVSDMEPKVFKALLHFIYRLSY 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00778 103 Gene3D Potassium Channel Kv1.1; Chain A 29 103 IPR011333 -
Cca09g00778 103 SUPERFAMILY POZ domain 31 99 IPR011333 -
Cca09g00778 103 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 36 102 - -
Cca09g00778 103 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 36 102 IPR045005 GO:0016567
Cca09g00778 103 ProSiteProfiles BTB domain profile. 41 103 IPR000210 GO:0005515
Cca09g00778 103 Pfam BTB/POZ domain 32 100 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00778 Cca-Chr9 23157885 23158629 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca09g00778 BTB 2e-19 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00778 K10523 - ccaj:109809032 151.754