Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00771 ATGTCAGGCCTGGGGCAACTCAACGTGAACGAGTCACCTTCGTGGGGATCCAGAAGCGTCGATTGCTTCGAGAAGTTGGAGCAAATTGGCGAGGGCACATATGGTCAGGTTTACATGGCTAGAGAGATCAAAACTGGTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAAGGGTTTCCTATAACTGCTATACGTGAAATCAAAATTCTAAAGAAACTACACCATGAAAATGTAATCAAGTTGAAAGAAATTGTGACTTCTCCAGGCCCTGAGAAAGATGAACAAGGGAGGCCAGATGGTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTGACAGGTCTTGCTGATCGACCTGGAATGAGATTCACAGTTCCCCAAATTAAGTGTTACATGAGACAGCTTCTGACTGGGCTGCATTACTGTCATGTTAATCAAGTACTTCACCGTGATATCAAAGGTTCAAATCTTCTCATAGATAATGAAGGTAATCTAAAACTTGCAGATTTTGGACTGGCACGATCATTTTCTAATGAACACAATGCAAATCTTACAAATCGTGTCATCACATTATGGTACAGACCCCCTGAGCTGCTCCTTGGGACAACGAGATATGGACCAGCTGTAGATATGTGGTCTGTAGGGTGCATTTTTGCAGAACTTCTTCATGGGAAACCTATCTTTCCTGGAAAAGACGAGCCGGAGCAATTAAATAAGATCTTTGAGCTCTGTGGAGCACCGGATGAGGTGAACTGGCCTGGTGTTTCTAAGACTCCTTGGTATAATCAATTTAAGCCAACACGACCAATGAAAAGACGTCTCAGGGAAGTTTTCAGACATTTTGATCGTCATGCTCTGGAATTATTGGAGAAGATGCTGACACTTGATCCTGCTCAGAGAATTACTGCCAAGGATGCACTTGATGCTGAGTATTTCTGGACTGATCCGTTACCATGTGATCCCAAGAGTTTACCAAAGTATGAGTCATCACACGAGTTTCAGACCAAGAAAAAGCGTCAGCAGCAACGACAAAATGAAGAAAATGCCAAGCGTCTTAAAATGCAGCATCCGCAACAACATAGTCGTCTTCCCCCCATTCAGCAAGCTGGGCAACAACATGGCCAAATGCGGCAAGGTCCTAACCACCCTATTCATGGATCTCAACCAACAGTTGCTGGAGGACCTAGCCATCACTATGGAAAACCCCGAGGTCCCTCTGGTGGACCAGGAAGATATCCACCTGGTGGGAACCCTGGTGGTGGGGGATACAATCACCCAAATCGTGGAGGTCAAGGAGGAGGGGGTGGTGGTTATGGCAGTGGGCCATATCCTCCTCAAGGGCGGGGTGCACCATATGGGTCGAGTGGAATGCCTGGCGGACCTGGTGGTGGTCCTCGTGGTGGCAGTGGGAGTGGCTATGGAGTTGGAGCACCAAATTATTCTCAAGGTGCTCCTTATGGTGGGTCTGCAACTGGGCGTGGCTCAAACATGATGGGTGGTAACCGCAACCAACAGTATGGTTGGCAGCAGTAA 1563 0.4639 MSGLGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMAREIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKTPWYNQFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPAQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEENAKRLKMQHPQQHSRLPPIQQAGQQHGQMRQGPNHPIHGSQPTVAGGPSHHYGKPRGPSGGPGRYPPGGNPGGGGYNHPNRGGQGGGGGGYGSGPYPPQGRGAPYGSSGMPGGPGGGPRGGSGSGYGVGAPNYSQGAPYGGSATGRGSNMMGGNRNQQYGWQQ 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00771 520 SMART serkin_6 23 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00771 520 MobiDBLite consensus disorder prediction 494 520 - -
Cca09g00771 520 ProSiteProfiles Protein kinase domain profile. 23 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00771 520 MobiDBLite consensus disorder prediction 333 520 - -
Cca09g00771 520 MobiDBLite consensus disorder prediction 370 395 - -
Cca09g00771 520 PANTHER CYCLIN-DEPENDENT KINASE C-2 8 452 - -
Cca09g00771 520 PANTHER CELL DIVISION PROTEIN KINASE 8 452 - -
Cca09g00771 520 SUPERFAMILY Protein kinase-like (PK-like) 17 330 IPR011009 -
Cca09g00771 520 Gene3D Transferase(Phosphotransferase) domain 1 120 362 - -
Cca09g00771 520 Pfam Protein kinase domain 23 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00771 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Cca09g00771 520 MobiDBLite consensus disorder prediction 335 364 - -
Cca09g00771 520 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Cca09g00771 520 CDD STKc_CDK9_like 23 322 - -
Cca09g00771 520 Gene3D Phosphorylase Kinase; domain 1 10 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00771 Cca-Chr9 22664279 22672797 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00771 1 520 Core Cell Cycle Gene Families AT5G10270 76.762 0.0 790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca09g00771 Pkinase 2.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00771 K08819 - gmx:100793565 891.723