Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00762 ATGGGAAACACTTGTGGAAAACCAGTTGCTCACGTGTCTTCCTCCAATTTTAATGGAAATAAGAAGCCTGAAAGTAAGCCAAGGCAGCATTCAAATTCTTCTGAAAAAAAACCTGCTCCAAAATCATCAGAGTCAAATCTTACCAAATCCATCTCTAGTAACCTTAAGTCCTTCAGCTTGAATGATCTAAAGGAGGCCACTAAGAACTTCCGGCGAGAAAATTTAATCGGCGAGGGAGGATTCGGCCGCGTCTTCAAAGGATGGATTGATGAAAACACATATGGTCCTACAAAACCAGGCAGTGGAATTGTGGTGGCCATTAAAAATCTTAAGCCAGAAAGTTTCCAAGGACACAAGGAATGGCTTACAGAAGTCAATTATCTTGGGCAGCTTCAGCATGAAAATTTGGTTAAACTTATAGGTTATTGCTTGGAAGGTAAAAACAGGCTTCTGGTTTATGAGTTCATGCAAAAAGGAAGTTTGGAGAATCATTTATTCAGAAAAGGTGTTCAACCTATGGCTTGGGTTACAAGGGTCAACATAGCAATTGGTATTGCAAGAGGATTAACATTCTTACATTCCTTGGACGCAAATGTTATCTTTCGTGATTTAAAGGCTTCCAACATCCTACTTGATTCAGACTTCAATGCAAAACTTTCGGATTTTGGTTTGGCAAGAGATGGTCCTACTGGAGATAACACTCACGTTTCTACTAGAGTTATAGGAACTCAAGGCTACGCAGCACCTGAGTATGTTGCTACAGGTCACTTGACTCCAAGGAGTGATGTATACAGCTTTGGTGTAGTCTTGTTAGAGTTACTGACAGGAAGGCGTGCCGTGGAAGACGATAGACCCGGATTTTCAGAGGAAACACTGGTGGATTGGGCAAAGCCATTCTTGAGTGATAGCAGAAGAGTTTTGAGAATAATGGACACAAGGTTGGGGGGTCAATACTCCAAGAAAGGAGCACAAGCTGCAGCTGCACTTGCATTGCAATGCCTCAACACTGACCCAAAATTTAGACCACCTATGGTGGAAGTTCTAGCAGCATTGGAAGGACTTAATTCCACAAATTCATTCCCAAGGACACCAAAATCTGATAACCATGCAACCAAACATTCTGGTGCTCATTCACAGAAGTAA 1143 0.4182 MGNTCGKPVAHVSSSNFNGNKKPESKPRQHSNSSEKKPAPKSSESNLTKSISSNLKSFSLNDLKEATKNFRRENLIGEGGFGRVFKGWIDENTYGPTKPGSGIVVAIKNLKPESFQGHKEWLTEVNYLGQLQHENLVKLIGYCLEGKNRLLVYEFMQKGSLENHLFRKGVQPMAWVTRVNIAIGIARGLTFLHSLDANVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRAVEDDRPGFSEETLVDWAKPFLSDSRRVLRIMDTRLGGQYSKKGAQAAAALALQCLNTDPKFRPPMVEVLAALEGLNSTNSFPRTPKSDNHATKHSGAHSQK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00762 380 PANTHER OS01G0588500 PROTEIN-RELATED 17 378 - -
Cca09g00762 380 SUPERFAMILY Protein kinase-like (PK-like) 44 358 IPR011009 -
Cca09g00762 380 MobiDBLite consensus disorder prediction 23 37 - -
Cca09g00762 380 Gene3D Transferase(Phosphotransferase) domain 1 156 376 - -
Cca09g00762 380 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00762 380 PANTHER TYROSINE KINASE FAMILY PROTEIN 17 378 - -
Cca09g00762 380 SMART serkin_6 70 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca09g00762 380 MobiDBLite consensus disorder prediction 356 380 - -
Cca09g00762 380 MobiDBLite consensus disorder prediction 1 48 - -
Cca09g00762 380 ProSitePatterns Protein kinases ATP-binding region signature. 76 108 IPR017441 GO:0005524
Cca09g00762 380 MobiDBLite consensus disorder prediction 8 22 - -
Cca09g00762 380 CDD STKc_IRAK 76 354 - -
Cca09g00762 380 Pfam Protein tyrosine and serine/threonine kinase 73 349 IPR001245 GO:0004672|GO:0006468
Cca09g00762 380 Gene3D Phosphorylase Kinase; domain 1 44 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00762 Cca-Chr9 22415240 22419112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00762 21 351 Glycoside Hydrolase AT3G07070 48.204 5.88e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca09g00762 PK_Tyr_Ser-Thr 3.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00762 - - gmx:100800654 667.537