Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00753 ATGTCGGGTCGAGGAGGAGGAAGGGGTCGGTTTAGGAGGGACTACCCTTCAAGGTATGAAGACAATAAGGGGAATGGGGTTAGTGGACGTGATAACCgcagcagcaccagcaacagcaacaACCCTCCTTCCAGGCATCTCTGGGTTGGGAATCTATCCCACAACATTGTTGAGGAAGAACTTGCCCACCATTTCTTGCGGCTTGGACCGCTGGAGAATGTGGCATTCCAGCCTGGCCGCAGCTACGCTTTCATAAATTTTAGAAGGGATGAAGATGCTATTGATGCCATGAGAGCACTGCAAGGTTTTCCTCTTGCTGGCAACCCACTTAGAATCGAGTTTGCAAAGGCGGATAAGCCATCAGCAATGTCACGGGAGGAAGATTACTCATGGGATGAACGGAATTCAACATTAAGGGTATCTCCTTTCTCGCAAAGAGAGTTTAGAGGACACCATGGTAGCCCCGAACCACATTATTCTGACAAATCCAAGTTGAGTGATAAAAATCCAGAGCCCAGTGAGGTTTTGTGGATTGGGTTCCCAGCTCAGTTGAAGGTGGAAGAATCAATTTTAAGAAAGTCTTTTTCTCCATTTGGTGAGATAGTGAAGATTACTACATTTCCAGGTCGTAGTTATGCTTTTGTTCGCTTTAGGAGCCTGACGTCTGCATGCAGAGCAAGAGATAATCTGAAGGGAAAATTATTTGGGAATCCCCGTGTACATATTTGTTTTGCCAAGAGTGAAACAGGTTCATCGAGCAGTGAGAGGAGATCATTTAATGCCCCTCGTTCCCCAATTTACAAGTCAAGTGGTCGGGATGGATCTGCTGAGAACCTCAGACAGGATAGGAGCTTCAATGGAGATCGCATCATTGGTTCTCCAAATCTTTTCCGGAATCGGGATTCTGATGCTTATGATAACCGAAGGGGTTCTTCATGGGCTGGTGGAACAAACTCGTATGAACAAAGGAAAGTTGGAGAGAAGGGGAGAACACTAGGAGTATCACAAGAAATGTATGAACAAATGAATAGTCCATCAAGAGATAGACATGCTCATGTGGATGATTTTCCACAGAGGTTTCCTCAAAAGGATGCATTCTTTGAAGATTTGAGGGACTTGCCAGATGTTCCATATCTACGGGAGGCTAAAAGGCTGAAGACTGGTTCACCTCCTCCTGAAAGAGAGCTTCCAGAGTATCCTTTCTTCGAGTTAGAAAGACAGAAACGTGAGTTCCCAAGATTATTAACTGATTTACCCCCACACGAGCCTTTTGATAAAGGCTTTGATGCTGGAAATTTTAGTTATGGCCAGACTCTTGATCATCCCCCAAATTCCCCTCTGCATCGTTTGGATAGACATGAAAGCTGGAAACCTTATGATAGTTTGCAAATAGGTCCCGGTGCTGTGCAGTCAACTTTTGTTGAGAACAAAAGATTCACGCCTGAACCTGAAGGTTCATCTTTAACTGAGTGGAAATGGGAAGGAACCATTGCTAAAGGTGGCACTCCTGTTTGTCGTGCACGCTGCTTCCCTGTGGGGAAAATCCTAGATATCATGTTACCTGAATTCTTGGATTGCACTGCAAGAACTGGCCTAGATATGCTTGCAAAGCATTACTACCAAGCGGTTGGTGTTTGGGTTGTCTTCTTTGTGCCTGGAAGTGATGCTGACATCGAATTCTACAATGAATTTATGCATTATCTGGAGGAAAAGCAGCGCGCTGCAGTTGCCAAGTTGGATGACAAGACAACTTTATTTCTTGTTCCTCCATCAGAGTTCTCAGAGAAAGTACTGAAGGTACCTGGCAGGTTGAGCATATCTGGTGTCATTCTGAGGTTGGAGAATCCTGGTTTAAATAATCATGGTCCAGGACACGTTCAAGGAGAAACGACAAATGAAAACCTGTTGTCCTATAATGAGAATATACTCCATCCAAAGTCATCATTTCCATCAGTACGTATTCCTACATCTCCATCTATTTCAGAATTGGGGAACTCTGGAATCAGCAATCTTTCATTTCTGGGAAATAAGTTTGCCGCAGCTCCATCAGTTTCTGATTCAGCTCACGATGAAAGAAGTCGCAACTATCCTATCCAGCAGCGGACTTCTGGACCAAACTGGTCTTCACAAAATCTGCAGAACTTAATCTCTAATAGAACTCTACCATTGCAACAATCAGGTGGTACTTTAGAACCTGTGAATGAAGAACGCCAACCCATCAGGGCAGTGCCAGATGTAAACTCAATTCAACATTCCGGTATTCCATTTTATGGCGATGGCAAGTTGTCTTACCCAGATATCAGACATTTAGATCCTTTATCAGTGCCTGTGGGAGCTGTTCCACCAGAACAGCTTGCACAACTAGCTGCATCTCTTCTTGAGCAGCAGAGGCAATCAGGAAGCTCTTCGAGTGCATCTGCATTGGGTGATCCCCGGCATATGAACAGATTTAACGCGTCTGACACCTCACCAAGATTCAGCACATCAGACACCTCCGCCAGACCACCCCAGAAATATGCTACAGAAAACAATCTGGTGAATTCTGATCTCTCAACATCTCAGTTTGGTCAAATTCTACAGATGCAAAAGCAACAACAGGTCCCAAATGCGCCTCAGTTGCCACAGATGGCACAAAGGGAGCCACAAAAAGAGGCTAACGGAAATCAGCTGTTGACAGATAATAGTAGCTTGCAGGAAGATGCTGATGCAGATCCACAGAAACGTCTACAAGCAACGCTACAGCTGGCTGCTGCTCTTCTTCAGCAGATCCAGCAAAGAAAAGGAAGTTGA 2790 0.4444 MSGRGGGRGRFRRDYPSRYEDNKGNGVSGRDNRSSTSNSNNPPSRHLWVGNLSHNIVEEELAHHFLRLGPLENVAFQPGRSYAFINFRRDEDAIDAMRALQGFPLAGNPLRIEFAKADKPSAMSREEDYSWDERNSTLRVSPFSQREFRGHHGSPEPHYSDKSKLSDKNPEPSEVLWIGFPAQLKVEESILRKSFSPFGEIVKITTFPGRSYAFVRFRSLTSACRARDNLKGKLFGNPRVHICFAKSETGSSSSERRSFNAPRSPIYKSSGRDGSAENLRQDRSFNGDRIIGSPNLFRNRDSDAYDNRRGSSWAGGTNSYEQRKVGEKGRTLGVSQEMYEQMNSPSRDRHAHVDDFPQRFPQKDAFFEDLRDLPDVPYLREAKRLKTGSPPPERELPEYPFFELERQKREFPRLLTDLPPHEPFDKGFDAGNFSYGQTLDHPPNSPLHRLDRHESWKPYDSLQIGPGAVQSTFVENKRFTPEPEGSSLTEWKWEGTIAKGGTPVCRARCFPVGKILDIMLPEFLDCTARTGLDMLAKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEEKQRAAVAKLDDKTTLFLVPPSEFSEKVLKVPGRLSISGVILRLENPGLNNHGPGHVQGETTNENLLSYNENILHPKSSFPSVRIPTSPSISELGNSGISNLSFLGNKFAAAPSVSDSAHDERSRNYPIQQRTSGPNWSSQNLQNLISNRTLPLQQSGGTLEPVNEERQPIRAVPDVNSIQHSGIPFYGDGKLSYPDIRHLDPLSVPVGAVPPEQLAQLAASLLEQQRQSGSSSSASALGDPRHMNRFNASDTSPRFSTSDTSARPPQKYATENNLVNSDLSTSQFGQILQMQKQQQVPNAPQLPQMAQREPQKEANGNQLLTDNSSLQEDADADPQKRLQATLQLAAALLQQIQQRKGS 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00753 929 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 110 IPR000504 GO:0003723
Cca09g00753 929 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 239 IPR000504 GO:0003723
Cca09g00753 929 MobiDBLite consensus disorder prediction 816 847 - -
Cca09g00753 929 PANTHER RNA-BINDING PROTEIN SPENITO 22 919 - -
Cca09g00753 929 MobiDBLite consensus disorder prediction 860 908 - -
Cca09g00753 929 MobiDBLite consensus disorder prediction 7 27 - -
Cca09g00753 929 Pfam SPOC domain 487 600 IPR012921 -
Cca09g00753 929 Gene3D - 160 258 IPR012677 -
Cca09g00753 929 MobiDBLite consensus disorder prediction 860 899 - -
Cca09g00753 929 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 117 IPR000504 GO:0003723
Cca09g00753 929 MobiDBLite consensus disorder prediction 1 46 - -
Cca09g00753 929 MobiDBLite consensus disorder prediction 251 323 - -
Cca09g00753 929 MobiDBLite consensus disorder prediction 792 847 - -
Cca09g00753 929 MobiDBLite consensus disorder prediction 682 708 - -
Cca09g00753 929 CDD RRM3_Spen 47 116 - -
Cca09g00753 929 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 247 IPR000504 GO:0003723
Cca09g00753 929 SMART rrm1_1 46 113 IPR000504 GO:0003723
Cca09g00753 929 SMART rrm1_1 175 243 IPR000504 GO:0003723
Cca09g00753 929 Coils Coil 906 926 - -
Cca09g00753 929 MobiDBLite consensus disorder prediction 145 169 - -
Cca09g00753 929 SUPERFAMILY RNA-binding domain, RBD 165 249 IPR035979 GO:0003676
Cca09g00753 929 SUPERFAMILY RNA-binding domain, RBD 31 122 IPR035979 GO:0003676
Cca09g00753 929 Gene3D - 26 124 IPR012677 -
Cca09g00753 929 MobiDBLite consensus disorder prediction 251 265 - -
Cca09g00753 929 MobiDBLite consensus disorder prediction 142 170 - -
Cca09g00753 929 MobiDBLite consensus disorder prediction 792 809 - -
Cca09g00753 929 PANTHER RNA RECOGNITION MOTIF-CONTAINING 22 919 - -
Cca09g00753 929 MobiDBLite consensus disorder prediction 28 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00753 Cca-Chr9 22104529 22128638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00753 1 265 Eukaryotic Initiation Factors Gene Family AT1G22760 22.491 3.71e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00753 - - vra:106775670 1450.65