Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00746 ATGGCTCGAAAGAAGGTAGACCTTACATACATAACCAATGACTCGAAGAGAAGAGCAACTTTAAAGAAAAGGAAAAATGGCTTGATCAAGAAGATTGATGAAATTGGTATTCTTTGTGGGATTGAAGCATGCGCTATAATTTATACTCCAGATGATCCTCAGCTAGAGGTTTGTCCATCTGACCAAGGAGTCCAAAATGTGCTTTCTAGGTTTAGGCAAGTGTCTGAATTGGAACAAAGCAAAAAAATGTTGAGTCAAGAGAGCTTTTTGAGTGAGAAGATAGTCAAAGCTCAGGCCCAATTGAAGAAACTAAGTAATGGAATTAAGAAAAAAGAGACGACCCTTCTCATGTTCCAATACCTCAATGCTGGGCACATTTTCAACAATGCCAACATGAATGATCTAAATAATATCTCACGCTTGATTGAGCAAAACTTGGGGGAAATAGAAAGGAAAAATAATATTAGTCAAGTCCAAGAAGTGACCCCTAAT 492 0.376 MARKKVDLTYITNDSKRRATLKKRKNGLIKKIDEIGILCGIEACAIIYTPDDPQLEVCPSDQGVQNVLSRFRQVSELEQSKKMLSQESFLSEKIVKAQAQLKKLSNGIKKKETTLLMFQYLNAGHIFNNANMNDLNNISRLIEQNLGEIERKNNISQVQEVTPN 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00746 164 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca09g00746 164 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca09g00746 164 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca09g00746 164 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Cca09g00746 164 PANTHER MADS BOX PROTEIN 2 159 - -
Cca09g00746 164 Coils Coil 132 152 - -
Cca09g00746 164 Coils Coil 94 114 - -
Cca09g00746 164 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca09g00746 164 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Cca09g00746 164 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Cca09g00746 164 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca09g00746 164 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cca09g00746 164 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00746 Cca-Chr9 21824576 21825215 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00746 1 152 Type I MADS-box Gene Family AT5G48670 48.684 3.59e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca09g00746 SRF-TF 3.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00746 - - ccaj:109792331 321.627