Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00745 ATGGCTAGAAAGAAGGTAGACCTTACATACATAACCAATGACTCGAAGAGAAAAACAACGTTGAGGAAAAGGAAAAATGGTTTGATCAAGAAGATTGGTGAAATCAGTATCCTTTGTGAGGTTGAGGCATGCGCTATAATTTATACTCCAGATGATCCTCAGCCAGAGGTTTGTCCATCTAACATGGGAGTCCAAAATGTGCTTTCTAGGTTTAGGCGAGTGTCTGAATTTGAACAAAACAAAAAAATGTTGAGTCAAGAGAGCTTTTTGAGTCAAAGGATCATTAAAGCCCAAGCCCAAATGAAGAAACTAAGTAATGCAACTAGGAAGAAAGAAATAACCCTTCTCATGCTTCAATACCTCAATGCTGGGAACATTTTTGACAATGCCAACATGATTGATCTAAATGATATCTCACGCTTGATTGATAAAAACTTGGGGGAAATAGAAAGGAAAAAAAATCTTAGTCGAGTCCAAGAGATGACCCCAAATGTTGAAAATGGAAGAATAACCATGACTCAAGAAAATCAAGCAATTATGAATAATGTTCAAGGGTTGAAGACCAATGTGGATGCCATGCAAAAACAAAATTAA 594 0.367 MARKKVDLTYITNDSKRKTTLRKRKNGLIKKIGEISILCEVEACAIIYTPDDPQPEVCPSNMGVQNVLSRFRRVSEFEQNKKMLSQESFLSQRIIKAQAQMKKLSNATRKKEITLLMLQYLNAGNIFDNANMIDLNDISRLIDKNLGEIERKKNLSRVQEMTPNVENGRITMTQENQAIMNNVQGLKTNVDAMQKQN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00745 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca09g00745 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca09g00745 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca09g00745 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Cca09g00745 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca09g00745 197 Coils Coil 176 196 - -
Cca09g00745 197 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 165 - -
Cca09g00745 197 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca09g00745 197 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cca09g00745 197 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Cca09g00745 197 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Cca09g00745 197 PANTHER MADS BOX PROTEIN 2 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00745 Cca-Chr9 21746512 21747258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00745 1 157 Type I MADS-box Gene Family AT5G48670 47.771 1.03e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca09g00745 SRF-TF 4.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00745 - - ccaj:109792331 297.36