Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00731 ATGGACCTCGAAATCCAAGCGATTAGGGCGGTTCGCGACGTGGAGGTTGAGCACTTGCTGACGGAGCTGCAATTCCTGCGCTCGCGTTTCAGCAGTGAGCAGCTTCAGAAACCGCTGTTTCAGGTTTTCCAAGAAACCCTACCCAACCTCTCTGTGGTGAACGACGAGCGCAACAAGAAAGTGGGAGTGAAATGGAGGGGGAAAGAGAGTTGCAACGACGTGCACGCTTCTTTGCTCCAAAGGACCTACTGTGCTGAGATTGCACACAATGTATCCACAAAGAAGAGGAAGGATATTGTTGAGAGATGTTTTTGTGACAAGCAAAACTGTCAGACTTCGCAGCCAGGAAGATGA 354 0.5028 MDLEIQAIRAVRDVEVEHLLTELQFLRSRFSSEQLQKPLFQVFQETLPNLSVVNDERNKKVGVKWRGKESCNDVHASLLQRTYCAEIAHNVSTKKRKDIVERCFCDKQNCQTSQPGR 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00731 117 SUPERFAMILY Ribosomal protein L32e 71 103 IPR036351 -
Cca09g00731 117 Pfam Ribosomal protein L32 73 102 IPR001515 GO:0003735|GO:0005840|GO:0006412
Cca09g00731 117 PANTHER TRANSLATION INITIATION FACTOR 4 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00731 Cca-Chr9 21443707 21444151 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00731 81 103 Cytoplasmic Ribosomal Protein Gene Family AT4G18100 91.304 4.33e-08 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00731 - - ccaj:109812447 239.195