Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00723 ATGGGTCGTCCAAAGTTAATCTTGAAACCCATTCCAAATGGGAGAGATCGTGATTTGGCTTTCAGGAAGAGAAAGAAGGTACTAATGAAGAAAATGTCTGAATTTTCTAGCGTATGTGGAGTCAACACTTGCTTGGTTATGTATGATGGCAATGGTGATGATGCTCCACCACATACTTGGCCTCAAGATCCCAATGAGGTGCACTCCATCATTGCAAGATATGAAAGTGTAAAGAATGAGAAACTTCCCAAGAACTTTGATCTCAACAACTTTTTTTACGATAGGAAGAATGCGATTGAAGTTGAGACTTGCAAGGTTAAAAATGAGACCCTTAAGATCAAATATCCAACTTGGCACCCAAGTTTTGATAACTTAGGTATAAAGGAGTTGAGTAATTTCATTGCTATGTTGGACCATAAATTTGAAGCTTGTAACCAACGAGTTGAAATGGCGAAATACAAGCGTCAAGTTGAAGCCAACTTCAATTTCATGCAGTGCATGGTTCCATCAGAGATTGCTGCCCCAACCCAAAGCCAACTCAATTTCATGCATGGCAATGGCATGTCTCAAAATCAACTCACCAATGCTCCCATGAAGCCACTGAATGATGGTAACCTTGTAACATCTTACCCACTTAATCATGATCAAGGTTCTTGTTCTAAACCCCCAATGCTTCACTTTGATCAAAATCTTATGCAATTGATGACAAAGAATAAAGGGGTGGTGGTGGATAGTACTAATCAAGTTGGGGGGCCTCTGGATTGTGCTACCAAAATTGATGCTAATGGAAATTCTACAAATCAAGATGATGTGCCTGCGGATTTGACTAAATTAGTTGATGAGTCTTTGGACTATTTTAGTCAACTAGGTGAAATTGAAGATCTGACTAGTCCACTTGATGAGTTTGTGAATTGGGTTAGTCAACCTGATGTGTCTAGAAATTGGACTAATCAACATGGTGTGCCAATGATTGGGGGAAGTACTGCAGCTACTAGTTTTCATGGGGATACACATAACCATGAGTCCGCACTTAGCAATTACAATGGAGGTTTGCAATCAATGCAACCCTATAACTATGATGCTGCATTGCAGAATATTGCTCCTCAGTCTCAGAATCTGCACCAAATGGCAACTTTGCCTCCCCTTCTACCATCCGTGGAAATTTCAGAGGGATCAGTGCACCAATAA 1188 0.404 MGRPKLILKPIPNGRDRDLAFRKRKKVLMKKMSEFSSVCGVNTCLVMYDGNGDDAPPHTWPQDPNEVHSIIARYESVKNEKLPKNFDLNNFFYDRKNAIEVETCKVKNETLKIKYPTWHPSFDNLGIKELSNFIAMLDHKFEACNQRVEMAKYKRQVEANFNFMQCMVPSEIAAPTQSQLNFMHGNGMSQNQLTNAPMKPLNDGNLVTSYPLNHDQGSCSKPPMLHFDQNLMQLMTKNKGVVVDSTNQVGGPLDCATKIDANGNSTNQDDVPADLTKLVDESLDYFSQLGEIEDLTSPLDEFVNWVSQPDVSRNWTNQHGVPMIGGSTAATSFHGDTHNHESALSNYNGGLQSMQPYNYDAALQNIAPQSQNLHQMATLPPLLPSVEISEGSVHQ 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00723 395 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Cca09g00723 395 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Cca09g00723 395 PANTHER MADS BOX PROTEIN 5 266 - -
Cca09g00723 395 PANTHER PROTEIN, PUTATIVE-RELATED 5 266 - -
Cca09g00723 395 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Cca09g00723 395 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Cca09g00723 395 CDD MADS_SRF_like 2 89 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cca09g00723 395 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00723 Cca-Chr9 21225533 21226720 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00723 1 147 Type I MADS-box Gene Family AT5G55690 29.801 5.43e-20 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca09g00723 SRF-TF 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00723 - - ccaj:109791338 820.846