Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca09g00720 | ATGAGCTTTGGAAGTAGAGGGAAGGTGAAAGACACAAGCTTGAGCACATCAGCTGAAAGCAACATGAACACAAAGAGGGACAAAACACTGGCTCAGTACAGTGCAGATGCTGAGATTCTGGCTGAGTTTGAGCAGTCTGGTGTGTCTGGCAAATCATTTGACTACTCAAGGATGGTTCTTGACCCTCCCAGGTTAGTGTCTGAGGAGAAAATGATTGCTTATTTGTCCAAAATCCAAAGGGGTGGCCTTATCCAACCCTTTGGTTGCATGCTTGCAATTGAGGAACCTACTTTTAGGGTCATTGGGTACAGTGAGAATTGCTTTCAGTTGTTGGGTTTGGAGAGGAAAATTGACTCTAAGCAGTTCATGAGTCTGATTGGGGTTGATGCCACAACCCTTTTCACTCCCCCTTCTGGCGCTTCCCTTGCAAAAGCTGTGGCTTCAAGGGAAATTTCCCTTTTGAACCCAATTTGGCTCTATGCAAGGGCAACCCAGAAGCCATTTTATGCCATACTTCATAGGATTGATGTTGGGATTGTGATTGATTTGGAGTCTGCGAGGTCGAGTGATCCGGCATTGTCACTTGCTGGGGCAGTTCAGTCGCAGAAGCTGGCTGTTAGGGCAATTTCAAGGCTGCAATCTCTTCCTGGGGAAGATATTGGTCTATTGTGTGACACTGTTGTTGAGGAAGTGCAGAAGCTCACCGGATATGACAGGGTTATGGTTTATAAGTTTCATGAGGATGATCATGGTGAGGTTGTATCTGAGATTAGGAGGTCAGATTTGGAGCCTTACTTGGGTTTGCATTATCCTGCCACGGATATCCCTCAAGCCTCTCGCTTCTTGTTCAAGCAAAACCGAGTTAGGATGATTTGTGATTGCCATGCAAAGCCAGTTAAGGTCATTCAGAGTGAAGAATTAAGGCAACCTCTTTGCTTGGTGAACTCAACCCTTAGGTTACCACATGGTTGTCACGCACAGTACATGGCTAACATGGGCTCAATTGCCTCTCTGGTCATGGCAATTATAGTTAATGGAAATGATACAACAAGGCTTTGGGGTTTGCTTGTTTGTCATCACACTTCGCCACGCTACGTGTCTTTCCCGGTTCGCTATGCTTGTGAGTTCCTAATGCAGGCTTTTGGACTGCAGCTTTACATGGAGATTCAATTGGCATCTCAGATGGCAGAGAAGAGAATTCTTAAAACACAAACCTTACTGTGTGACATGCTCCTTCGTGATGCACCGTTTGGCATTGTGAATCAATCACCAAGTATAATGGATCTGGTAAAGTGTGATGGGGCTGCCTTGTATTATGATGGAAACTGTTGCTTGTTAGGCACAACCCCAACTGAAACACAGGTGAAAGACATTGCAGAATGGCTACTTAGTAATCATGGAGACTCAACAGGTTTGACAACAGATAGTTTGGCTGATGCTGGTTATCCAGGCGCTGCTTCGCTTGGTGATGCAGTTTGTGGCATGGCTACAGCAAGAATTGATTCAAAACATTTCTTGTTCTGGTTCAGGTCTCACACTGCAAAGGAAATGAAATGGGGAGGAGCCAAGCACCATCCTGAGGATAAGGATGATGGAGGAAAAATGAACCCAAGGTCATCATTTAAAGCTTTTCTTGAAGTAGTCAAAAGCAAAAGTTTGCCTTGGGAAATTTCAGAAATCAATGCTATTCATTCATTACAACTAATAATAAGAGATTCCTTCCAAGACACACAGAACACTGGTCCAAAGACTTTAAATTATGTACAGAAAAGTGACACTGCAACTGGAGGCGTTGATGAACTCAGTTCAGTGGCACTTGAAATGGTGAGACTAATTGAGACAGCAACTGTCCCAATTTTTGGGGTTGATTCAGGTGGCATAATCAATGGATGGAATTCAAAAATTGCTGAATTGACAGGTCTACAGGCCATTGAAACTATGGGGAAATTGCCGGTAAATGAAATTATACACCCAGACTCGTGTGACACTTTTAAAAATACTCTAAGCAGAGCCTTGCAAGGCCAGGAGGACAAAAATGTGGAGTTGAAAATAAAACAATTTGGGCTTCATCAACAAAAGGAAGTTGTATATCTCATGGTCAATGCTTGTACTAGTAGGGACTACACAGATGCTATTGTTGGGGTATGCTTTGTAGGCCAAGACATCACTTATGAGAAAGTGGTTCAAGATAAATTCATCAAGTTGGAAGGTGATTACAAAGCTATAATACAGAGTCTCAGTCCACTGATTCCACCCATATTTTCTTCTGATGAGAATGCATGCTGCTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGAAAAGAGATGAAGTCGTTGGAAAATTGCTTCCTGGTGAAATTTTTGGAAGCTTTTGTCGACTAAAAGGTCAAGATACACTGACTAATTTTATGATTTTACTATATCGTGGAATAAGCGGTCAAGATTCTGAGAAGTTACCGTTTGGATTTTTTGATAGAAATGGAGAATTTATAGAGACTTTTATAACAGCAAACAAGAGAGTTGATGCTGGTGGGAATATGTTTGGTTGTTTCTGCTTCTTGCAGATTGTAACACCAGACTCGAATCAGCCCTCTGAAGAAGAACACAGGCCTAGAGGCAGGGAAAACATTTCTGAATCTAAGGAGCTGGCCTATATACTGCAAGAGATGAAGAAACCTTTAAATGGTATAAGATTCACACACAAACTTTTAGAAAATACCAGAGTCTCAGAAAATCAAAAACAATTTCTTGACACTAGTGGTGCATGTGAAAGGCAAATCATGGCAATTATTGAGGGTACAAATTTAGGAAGTATTAATGAAGGCACATTGCAGCTAAACATGGAAGAATTTGTTCTTGGAAATATTTTAGATGCCATTGTCAGCCAAATCATGATGTTGATAAGAGAAAAGAACTTGCAACTGTTTCATGAAATTCCTGATGAAATAAAGATGCTTTCTCTATATGGCGACCAAATTAGGCTTCAGGTGGTCTTGTCTGACTTTTTGCTTAATGTAGTCAATCATACACCATCTCCAAATGGCTGGGTAGAAATCAAGATTTCACCTGGTTTAAAGATAATACAGGATGGTAATGAGTTTATCCATCTGAAGTTCAGAATGACTCATTTCGGTCAAGGTCTTCCTTCGGATGTTCTTCATGATATGTTCGAAGGAGGGAATCAATGGACTACACAGGAAGGTCTAGGACTATATATGTCCAGGAAAATCCTCAGTAGGATGAATGGTCATGTTCACTACGTCAGAGAACAAAATAAGTGCTATTTTCTCATTGATCTTGAAATTAGAACAAGAAAAGAAAGGCAAAGGAATCTCCATGCAGAGACAAGCATGTTAAGTTAG | 3369 | 0.4141 | MSFGSRGKVKDTSLSTSAESNMNTKRDKTLAQYSADAEILAEFEQSGVSGKSFDYSRMVLDPPRLVSEEKMIAYLSKIQRGGLIQPFGCMLAIEEPTFRVIGYSENCFQLLGLERKIDSKQFMSLIGVDATTLFTPPSGASLAKAVASREISLLNPIWLYARATQKPFYAILHRIDVGIVIDLESARSSDPALSLAGAVQSQKLAVRAISRLQSLPGEDIGLLCDTVVEEVQKLTGYDRVMVYKFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQASRFLFKQNRVRMICDCHAKPVKVIQSEELRQPLCLVNSTLRLPHGCHAQYMANMGSIASLVMAIIVNGNDTTRLWGLLVCHHTSPRYVSFPVRYACEFLMQAFGLQLYMEIQLASQMAEKRILKTQTLLCDMLLRDAPFGIVNQSPSIMDLVKCDGAALYYDGNCCLLGTTPTETQVKDIAEWLLSNHGDSTGLTTDSLADAGYPGAASLGDAVCGMATARIDSKHFLFWFRSHTAKEMKWGGAKHHPEDKDDGGKMNPRSSFKAFLEVVKSKSLPWEISEINAIHSLQLIIRDSFQDTQNTGPKTLNYVQKSDTATGGVDELSSVALEMVRLIETATVPIFGVDSGGIINGWNSKIAELTGLQAIETMGKLPVNEIIHPDSCDTFKNTLSRALQGQEDKNVELKIKQFGLHQQKEVVYLMVNACTSRDYTDAIVGVCFVGQDITYEKVVQDKFIKLEGDYKAIIQSLSPLIPPIFSSDENACCSEWNAAMERLTGWKRDEVVGKLLPGEIFGSFCRLKGQDTLTNFMILLYRGISGQDSEKLPFGFFDRNGEFIETFITANKRVDAGGNMFGCFCFLQIVTPDSNQPSEEEHRPRGRENISESKELAYILQEMKKPLNGIRFTHKLLENTRVSENQKQFLDTSGACERQIMAIIEGTNLGSINEGTLQLNMEEFVLGNILDAIVSQIMMLIREKNLQLFHEIPDEIKMLSLYGDQIRLQVVLSDFLLNVVNHTPSPNGWVEIKISPGLKIIQDGNEFIHLKFRMTHFGQGLPSDVLHDMFEGGNQWTTQEGLGLYMSRKILSRMNGHVHYVREQNKCYFLIDLEIRTRKERQRNLHAETSMLS | 1122 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca09g00720 | 1122 | PANTHER | PHYTOCHROME E | 25 | 1111 | - | - | |
| Cca09g00720 | 1122 | SMART | gaf_1 | 219 | 399 | IPR003018 | GO:0005515 | |
| Cca09g00720 | 1122 | SUPERFAMILY | GAF domain-like | 397 | 576 | - | - | |
| Cca09g00720 | 1122 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 219 | 379 | IPR016132 | - | |
| Cca09g00720 | 1122 | Coils | Coil | 665 | 685 | - | - | |
| Cca09g00720 | 1122 | CDD | PAS | 749 | 857 | IPR000014 | - | |
| Cca09g00720 | 1122 | Gene3D | PAS domain | 77 | 322 | - | - | |
| Cca09g00720 | 1122 | Gene3D | - | 924 | 1098 | IPR036890 | - | |
| Cca09g00720 | 1122 | CDD | HATPase_Phy-like | 991 | 1104 | IPR044767 | - | |
| Cca09g00720 | 1122 | PIRSF | Phytochrome_conventional | 7 | 1113 | IPR012129 | GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803 |
Showing 1 to 10 of 48 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca09g00720 | K12123 | - | gmx:100808192 | 2078.52 |
Showing 1 to 1 of 1 entries