Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00719 ATGAGGCAGTCGTTTGATCCTTCATCTTTTGGTCCTTCCAAGATCCCAGCTATAAAAATACCTGGAAAATCAGGGAATGGTGCATGGGGGGCTTTGTCTGGATCTGATTCCTACCATACTTCATCCGATGCTAGCCTCTTTTCTAGTTCTTTGCCTGTTCTTCCACATGAAAAATTGAACTTGAATGAAACTGAAAATGGTTATCAATCTGTTGATGACATCTCATCCGGCTTTAAGAAGCTCCATCAAGATGCTGGTGGCAATGGTTCACTTGAAGATGGTGATACTCATGCACTTGGAACCATGCTTCCTGATGATGAGGAGGAGCTTTTAGCTGGTATAATGGATGATTTTGACCTAAGTGGTTTGCCTGGTTCCCTTGAGGACTTGGAAGAATATGATCTTTTTGGTAGTGGTGGAGGTATGGAACTTGAAACTGATCCACAGGAAAGTCTCACTGTGGGTATGTCTAAGTTAAGTTTTGCTGATAGTACTGTTGGCAATGGTTTGCCCCAATATTCTTTTCCCAATGGTGTGGGAACTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTGGAGGATTCAGAGCTGAGAGCTCTTTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCCTGCAAACATCGAGGATTTGTAATGATATCCTATTATGACATCCGTGCTGCTCGAACAGCCATGCGTGTATTACAAAACAAACCTCTGCGGCGCAGGAAACTAGACATTCACTTTTCCATACCAAAGGATAATCCATCAGACAAGGATATCAACCAAGGAACATTGGTAGTATTCAACTTAGATCCATCTGTTTCAAATGAAGACCTCCGCCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCCCACAAGAGGCATCACAAGTTTATTGAGTTTTATGATGTCAGAGCTGCAGAAGCAGCACTTAAATCATTGAACAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCTAGTCGGCCTGGAGGAGCTCGTAGAAATTTGATGCTCCAATTAAATCAAGAGCTTGACCAAGATGAATCTCGGAGCTTCCGATATCAAGTGGGTTCACCTGTAGCTAGCTCTCCTCCAGGTAACTGGTTACAGTTCAACAGCCCTGTTGAGCAGAATTCAATGCAAACTATCAATCATTCTCCTGGTTCTAGGATCATGAGCCCAACAGCAGGCAATCATTTACCTGGTTTAGCTTCAATTTTGCAACCACAAGTATCTAACACTGTGAAGGCCGCTGCTATTGGCAATGAATTGGGAAGGAACAGTCAAGCAGAGCACATATTTACCAGTATGAATTCATCACATGGAGCTACTTTTCAGTCACATTCACTTCCAGAGCCAAAATTCAGCCAGTATCGTGGAGCATTGTCCTCATTTGGTCCATCAACATCAAATGGATCCTCAGTGGAAACTTTGTCTGGGCCACAGTTTCTATGGGGAAGCCCAACCCCTTACTCAGAGCATAGCAAACCTTCAGCTTGGCCGAGATCATCTGTGGGGGGGCATCCATTTACATCCAATGGAAAGAACCATGCCGTCCCTTACTCAAGTCAGAATAGTTCTTTTGTTGGTtcatctcagcatcatcatcatcatcatGTTGGCTCTGCCCCATCAGGTTTGCCTTTTGAGAGGCACTTTGGTTTCCATCCCGAGTCATCTGAAACTTCATTCTTGAATAATGTTGGTTATGGAGGCATGAGTCTAGGGCACAATGATGGAAATTACATGGTTAATGTTGGTGGATCTGTTAATGCTAACATTACTATCCCGAGAAATATATCTGATAATGGTTCATCAAACTTCAGAATGAGATCTTCTCCTAGGCTTAGCCCTGTCTATTTGGGAAATGGTCCTTATCCAGGACTGCCCCCTACCACTTTGGAGGGTTTGGCTGACCGTGCTCGGAGTCGATGGATAGAGAACAATGGGAGCCAAGTTGATAGCAAGAAACAATTTCAACTTGACTTGGATAAGATTAAAAGTGGTGAAGATACAAGAACTACCTTAATGATAAAGAATATCCCAAACAAATACACCTCAAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTACTTATGATTTTCTCTATCTGCCAATTGACTTCAAGAATAAATGCAATGTGGGCTATGCATTCATCAACATGCTGTCACCCTCTCTTATTATTCCATTCTATGAGACATTCAACGGGAAGAAATGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGGAAGTCTGCCCTTGTGAGCCACTTCCAGAATTCAAGCTTGATGAATGAAGATAAACGATGCCGCCCTATTCTCTTCCACTCAGAAGGTTCTGAGGCTGGTGATCTGGCCGTACAACAAGAGCATCTTCCTTCCAACTCCAACAATCTAAACATTCAGGCATTAAGGTCAAGTGAGTTACATTCAAGTGATTCTGCTGGGAGTCCTCAAAAGTCAGGCTTGGATATAAATTAA 2580 0.4198 MRQSFDPSSFGPSKIPAIKIPGKSGNGAWGALSGSDSYHTSSDASLFSSSLPVLPHEKLNLNETENGYQSVDDISSGFKKLHQDAGGNGSLEDGDTHALGTMLPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQESLTVGMSKLSFADSTVGNGLPQYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRVLQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPVASSPPGNWLQFNSPVEQNSMQTINHSPGSRIMSPTAGNHLPGLASILQPQVSNTVKAAAIGNELGRNSQAEHIFTSMNSSHGATFQSHSLPEPKFSQYRGALSSFGPSTSNGSSVETLSGPQFLWGSPTPYSEHSKPSAWPRSSVGGHPFTSNGKNHAVPYSSQNSSFVGSSQHHHHHHVGSAPSGLPFERHFGFHPESSETSFLNNVGYGGMSLGHNDGNYMVNVGGSVNANITIPRNISDNGSSNFRMRSSPRLSPVYLGNGPYPGLPPTTLEGLADRARSRWIENNGSQVDSKKQFQLDLDKIKSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKSALVSHFQNSSLMNEDKRCRPILFHSEGSEAGDLAVQQEHLPSNSNNLNIQALRSSELHSSDSAGSPQKSGLDIN 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00719 859 SMART rrm1_1 698 774 IPR000504 GO:0003723
Cca09g00719 859 SMART rrm1_1 195 263 IPR000504 GO:0003723
Cca09g00719 859 SMART rrm1_1 280 348 IPR000504 GO:0003723
Cca09g00719 859 SUPERFAMILY RNA-binding domain, RBD 698 782 IPR035979 GO:0003676
Cca09g00719 859 MobiDBLite consensus disorder prediction 840 859 - -
Cca09g00719 859 Gene3D - 183 277 IPR012677 -
Cca09g00719 859 CDD RRM2_MEI2_like 278 348 - -
Cca09g00719 859 MobiDBLite consensus disorder prediction 484 554 - -
Cca09g00719 859 PANTHER PROTEIN MEI2-LIKE 2 3 857 - -
Cca09g00719 859 Gene3D - 278 377 IPR012677 -
Cca09g00719 859 SUPERFAMILY RNA-binding domain, RBD 191 354 IPR035979 GO:0003676
Cca09g00719 859 MobiDBLite consensus disorder prediction 1 26 - -
Cca09g00719 859 CDD RRM3_MEI2_like 699 784 IPR034454 -
Cca09g00719 859 MobiDBLite consensus disorder prediction 484 567 - -
Cca09g00719 859 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 352 IPR000504 GO:0003723
Cca09g00719 859 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 346 IPR000504 GO:0003723
Cca09g00719 859 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 260 IPR000504 GO:0003723
Cca09g00719 859 PANTHER RNA RECOGNITION MOTIF-CONTAINING 3 857 - -
Cca09g00719 859 CDD RRM1_MEI2_like 193 269 IPR034453 -
Cca09g00719 859 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 267 IPR000504 GO:0003723
Cca09g00719 859 Pfam RNA recognition motif 2 696 792 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00719 Cca-Chr9 21050103 21058249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00719 189 387 Eukaryotic Initiation Factors Gene Family AT1G71770 25.561 1.30e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00719 - - gmx:100800877 1576.22