Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00713 ATGCCCCAAGCCGTAGCCTTACACTCTTCCCTTTGCTCCATCTCTTCTGAGAAACCATCTCCTTTAAGATCAACCCTTCATGTGGCACCCAAACCCACAAGCCTCCTCCAAAATCACCCACTTTACACCCCAACCCATGCCAAACTCTCCCTTGAATTCAAAGAGAAAATTCTCTGCCTTGAGGTGATGGGTGTTGATGCAGGCAAAGCACTGTCCCAAAACCCTGAACTCCGCACAGCCACCATGGAATCCATTCACTCCATCATCTCCTTCCTCATGTCCAAAGGCCTTCAAGAAAAGGACCTGCCCAGAATCATTGGCATGTGCCCCAAGATTCTCACTTCTGACATCAAAACTGATCTCAACCCAGTTTTTGATTTCCTCTTGCAAGAACTCAAAGTCCCTGAACATAGCTTCAGGAGGGTTGTCAATAAGTGCCCAAGATTGCTTACTTCTAGTGTCAAAGACCAGCTTAGGCCAGCTTTCATTTACCTAAGGAGACTTGGGTTCAAGGATTTGGGGGCTTTGGCTTATCAGGATTCTGTTCTGTTGGTGTCTAATGTAGAAAACACCCTCATCCCTAAACTGAAGTTTTTGGAGACTATAGGACTTTCTAGGGATGAGGTTAGGAGTATGGTGTTGAGATGTCCAGCACTTCTCACTTTCAGCATAGAAAATAATTTTCAGCCAAAGTATGAGTATTTGGCTAGGGAAATGGGGAGAAAATTGGAGGAGCTGAAAGGGTTTCCTCAGTACTTTGCTTTTAGTTTGGAGAACAGGATAAAGCCTAGACACACGGAGATTGTGCAAAATGGGGTCACTTTACCTTTGTCACTTATGCTTAAAAGCACTGATGAAGAATTTAGGGAGCTGATAAAGCAGGGGGGTGGATGA 894 0.4497 MPQAVALHSSLCSISSEKPSPLRSTLHVAPKPTSLLQNHPLYTPTHAKLSLEFKEKILCLEVMGVDAGKALSQNPELRTATMESIHSIISFLMSKGLQEKDLPRIIGMCPKILTSDIKTDLNPVFDFLLQELKVPEHSFRRVVNKCPRLLTSSVKDQLRPAFIYLRRLGFKDLGALAYQDSVLLVSNVENTLIPKLKFLETIGLSRDEVRSMVLRCPALLTFSIENNFQPKYEYLAREMGRKLEELKGFPQYFAFSLENRIKPRHTEIVQNGVTLPLSLMLKSTDEEFRELIKQGGG 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00713 297 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 13 294 - -
Cca09g00713 297 PANTHER CGI-12 PROTEIN-RELATED 13 294 IPR003690 GO:0003690|GO:0006355
Cca09g00713 297 SMART mt_12 68 98 IPR003690 GO:0003690|GO:0006355
Cca09g00713 297 SMART mt_12 210 242 IPR003690 GO:0003690|GO:0006355
Cca09g00713 297 SMART mt_12 243 274 IPR003690 GO:0003690|GO:0006355
Cca09g00713 297 SMART mt_12 103 135 IPR003690 GO:0003690|GO:0006355
Cca09g00713 297 SMART mt_12 174 205 IPR003690 GO:0003690|GO:0006355
Cca09g00713 297 SMART mt_12 140 171 IPR003690 GO:0003690|GO:0006355
Cca09g00713 297 Pfam mTERF 60 171 IPR003690 GO:0003690|GO:0006355
Cca09g00713 297 Pfam mTERF 183 288 IPR003690 GO:0003690|GO:0006355
Cca09g00713 297 Gene3D Transcription termination factor 3, mitochondrial 120 294 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00713 Cca-Chr9 20879469 20880593 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca09g00713 mTERF 1.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00713 K15032 - gmx:100788221 521.931