Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00708 ATGTTCTTGTCCAGATACATGGGTACCATAACTGGTATTAGTGATTTAGATCCGGTCCGCTGGCCAAATTCACACTGGCGCTCTGTGAAGGTTGGATGGGATGAGTCTACTGCAGGGGAGAGGCAGCCAAGAGTTTCGTTGTGGGAGATTGAACCTTTGACAACATTCCCAATGTATCCATCTCCATTCCCCTTAAGGTTGAGGCGCCCTTGGCCACCGGGCCTACCTTCTTTATATGGTCTCAAGGATGGAGACATGGGCATTGGTTCTCCATTCATGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAATCTTTAAACTTCCAGGGGCTTGGTGTTACACCATGGATGCAACCTAGACTTGATGCTTCTATACCAGGTCTCCAACCAGAGTTGTACCAAGCAATGGCTTCTTCTGCATTCCAGGAAATGAGGACAATGGATCCTTCAAAATCTTCCCAATCTCTGTTGCAGTTCCAGCAGACTTCAAATGTTCCCAGTGCTCATACCTCTGAGGTACAGAGGCAACTATTACCACAGTCTCAGCCTCAAAACACCATTCTACACAATTTTCAAGAAAACCAGGTGCCTGCTCAGTCACAACTTCTGCAGCAACAATTGCACCGATACCACCCATATAGTGATCAACGGCAACAACAGCAGCAACTTAAAAGCTTGCCTGTTCAGCAGCAGTTACCAAATGTCATCTCTCCTTTATCTAATTTTGCATCAGGTACCCAGTCTCAATCTCCTCCCTTGCAAGCCCTGGCTTCACATTGCCAGCAGCAGAGCTTTCCTGAACCTATCAGGAATCATATTTCCGGCTCTGATGTTTCCCCGATCCAGAGTCTACTAGGTTCATTCTCCCAGGATGGAACATCCCAGTTACTTAACTTAAATGGATCCAATTCTGTTATATCTTCTGCAGCCATAATATCCAAGCAAATAACTGTTGAACCTCAACTTCCATCTGCTGCTTCTCAGTGTGTATTGCCTCAGGTAGAAAACTTGGGAACATCACAATCAAATGTTTCTGAACTAGCTGCCTTGCCTCCATTTCCTGGAAGAGAACATTCTGCTTACCATGGTGCTGCTGATCCTCAGAGCAATCTTTTATTTGGGATTAACATTGATCCCTCTTCTCTTATGCTGCAAAATGGAATGTCAAACATCAGAAATATAGGCAATGTGAATGATTCTTTATCATTGCCATTTTCTGCTTCAAATTGTGGTGGTGCTACGGGCACTGATTTCCCCTTAAGTTCAAACATGACAACTTCGAGTTGTGTGGATGAATCAGGCTTTTTGCAGTCTTCTGAAAATGTAGACCAAGCAAATACACCAACTGGAACCTTTGTTAAGacacccaatttcgtccaggggcacacaaacaaGGAAAATGACCTCCGTTATGAAGGGAAGGAGCTTCCGAAGCAAGCAAACAACAAGATAGGACATCAGAAGGCCTAA 1473 0.4386 MFLSRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPPGLPSLYGLKDGDMGIGSPFMWLQGGLGDQGMQSLNFQGLGVTPWMQPRLDASIPGLQPELYQAMASSAFQEMRTMDPSKSSQSLLQFQQTSNVPSAHTSEVQRQLLPQSQPQNTILHNFQENQVPAQSQLLQQQLHRYHPYSDQRQQQQQLKSLPVQQQLPNVISPLSNFASGTQSQSPPLQALASHCQQQSFPEPIRNHISGSDVSPIQSLLGSFSQDGTSQLLNLNGSNSVISSAAIISKQITVEPQLPSAASQCVLPQVENLGTSQSNVSELAALPPFPGREHSAYHGAADPQSNLLFGINIDPSSLMLQNGMSNIRNIGNVNDSLSLPFSASNCGGATGTDFPLSSNMTTSSCVDESGFLQSSENVDQANTPTGTFVKTPNFVQGHTNKENDLRYEGKELPKQANNKIGHQKA 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00708 490 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 455 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca09g00708 490 MobiDBLite consensus disorder prediction 448 490 - -
Cca09g00708 490 MobiDBLite consensus disorder prediction 448 465 - -
Cca09g00708 490 Gene3D - 3 57 - -
Cca09g00708 490 MobiDBLite consensus disorder prediction 466 482 - -
Cca09g00708 490 PANTHER AUXIN RESPONSE FACTOR 6 4 455 - -
Cca09g00708 490 MobiDBLite consensus disorder prediction 145 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00708 Cca-Chr9 20701908 20706999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00708 3 412 B3 DNA Binding Superfamily AT5G37020 38.015 5.52e-50 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00708 - - ccaj:109792960 849.736