Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00703 ATGCTCCTATTGCCTTGTTCTTGCCCTTTCTTCTCCCTCATTAAGGACATCAGATTGGTTCACAAGATCATGATTAGGGTTAGTTTATCCTACCATTATTGGAGCGTCGTCAGTGCCCACCTCCATGGATGCACCATGATGATTCGTAGTCTTTTTACCATCATCCTCCTTAACCAAGGGCTCAGTGcattggAATTGTCGCTAGAATACTCATCTTTCTCCGGAACCCTAGCAGAGCTAGTTTTCTTCATCTCCCGAGTTAAAGAGAAGGCTCAAGAAGCAAGAAGCACATGGCAAGAACCCTATGATGGCACCTATCAATCTTCCAACTCAACCATTTGGTCCTTCTCTTCCTTCATCCTACCCAAGAGAGCAACAATATGTGCTCCCCAATACATGTACATGTACCCCCAACAACAAGACCACTTGCAGCAACAACTCGACAAGTTCTGGAGAAAACAGTGTAAGGAAATTGAGGAGACCACAAACATCAAGACTCATAGCTTGCCCGTAGCTAGGATTAAGAAGATCATGAAGGCTGAAGGGGATGTGATGATATCAGCTGAGGCTCCTATGATGTTTGCTAAGGCCTGTGACATGTTCATTCAAGAGCTCACAATGAGGGCTTGGGCTAATACCGAAAAGAACAAAAGAAGGGATGACACAATGGAGCATGTAGGGATACCAATACGAGGGATTGCTCTAACTCAGAATGTCCCTTGCTATTATTACATGTCACCTCATTTTTATGTTCCAAGCCGACCATATGTCACCACTCTCCCTCCTCCTCCACCTGCTCTCCTGTTGGCCCCCAGGATAGGCTACTTGCCTTTGTTGATTTCGCTTTTGAAGCCTCACTTCAGCACCATGCTTCCCCCTGGAGTTGACACCATTTGGTTTGAATACAAGGGCCTTCCTATTAAGTGGTATATACCCACTGGTGTTCTTTTTGATCTTCTATGCGTGGAGCCCGAGAGGCCGTGGAATTTAACGGTACACTTTAGAGGATATCCAAGTAATTTGTTGGTTCCCTGTGAAGGTGAAGACAGCGTGAAGTAA 1059 0.4514 MLLLPCSCPFFSLIKDIRLVHKIMIRVSLSYHYWSVVSAHLHGCTMMIRSLFTIILLNQGLSALELSLEYSSFSGTLAELVFFISRVKEKAQEARSTWQEPYDGTYQSSNSTIWSFSSFILPKRATICAPQYMYMYPQQQDHLQQQLDKFWRKQCKEIEETTNIKTHSLPVARIKKIMKAEGDVMISAEAPMMFAKACDMFIQELTMRAWANTEKNKRRDDTMEHVGIPIRGIALTQNVPCYYYMSPHFYVPSRPYVTTLPPPPPALLLAPRIGYLPLLISLLKPHFSTMLPPGVDTIWFEYKGLPIKWYIPTGVLFDLLCVEPERPWNLTVHFRGYPSNLLVPCEGEDSVK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00703 352 Gene3D Histone, subunit A 131 229 IPR009072 GO:0046982
Cca09g00703 352 Pfam Core histone H2A/H2B/H3/H4 149 219 IPR007125 GO:0003677
Cca09g00703 352 PANTHER AUTOPHAGY PROTEIN 5 257 352 IPR007239 GO:0005737|GO:0006914
Cca09g00703 352 Gene3D - 251 346 IPR042527 -
Cca09g00703 352 SUPERFAMILY Histone-fold 145 226 IPR009072 GO:0046982
Cca09g00703 352 Pfam Autophagy protein Apg5 309 352 IPR007239 GO:0005737|GO:0006914
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00703 Cca-Chr9 20432855 20445069 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00703 147 219 CCAAT-HAP5 Transcription Factor Family AT1G56170 68.919 9.55e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Cca09g00703 Histone 1.6e-11 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00703 K08339 - gmx:100789045 182.956