Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00688 ATGGCTGTGGAGAACCAAAGGGGCCATTTGGGGAATGAAGATGGGGGTAACGATCCTTTTCCCGTGGGTATGCGTGTTCTTGCTGTGGATGACGATCCAATTTGCCTCAAGGTGTTGGAGAATCTCCTTCGCAAATGCCAGTATCAGGTTACTACAACTAATCAGGCAGCTGAGGCTCTGAAGATGTTGAGGGAAAACAGAAATAAGTTTGACCTTGTTATCAGTGATGTGAACATGCCTGACATGGATGGATTTAAGCTTCTTGAGTTGGTGGGACTTGAAATGGACCTACCTGTCATAATGTTGTCAGCACACAGTGATACAAAGCTGGTGATGAAGGGTGTTACACATGGGGCGTGTGACTATTTGCTGAAACCTGTTCGAATGGAAGAGTTAAAGAACATATGGCAACATGTAATCCGAAGAAAGAATTCTGATGGCAAGGATCAGAATAAGAGTTCCAATGAGGAGAAAGCTCCTAATATTGCTGGGGAAGGTAGTCAAGGCCTGAGATCAGAAAACAGTGCTGACCAAAATAAAAGGCTCGGTAAAAGAAGAAAGGACCAAAGTGAGGATGAAGAAGAAGATGGGGAAGGGAATGGAGATGAGGAGGACCCCTCAGCACAGAAGAAACCTCGTGTAGTTTGGTCTGTTGAGCTGCATAGGAAATTTGTTGCTGCAGTTAATCAACTGGGCCTAGATAAGGCTGTTCCTAAGAAAATACTTGACCTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTGGCAAGCCATCTTCAGAAGTATCGACTCTATCTGAAGAAGGCAGCTCAGCAAGCTAACATGGTTGCTGCATTGGGTGGTAGCGATTCTTACCTACGTATGGGTTCAATAGATGGATATGGAGATTTTTGCACCTCATCTGGAACTGGAAGGATCTCGAACTCAACATTACCGTCATATGCATCTAGTGGTATTTTTAGTAGGCTGAATTCCCCAGCTGGCTTGAACATGAGAGGAATTAGTTCTTCTGCGCTTATCCGGCCTGTTCAGTCTCAAAACATTAACAGCTCCTTAAACACGCTAGGGAATATTCCGCCGTCCATGTTTCCTGCAAACCAAAGCTCAGGTTTATTACAGGGCATTCCAACATCAATTGAGCTTAACCAATCCAAGCAAAGCAACTGTGCAACTGGAATATCGCCGTTAAACCAAGTTGATTCAAGTGGATTTACAGTTGCTTCCAGCTTCCCAGATAGCAGGGCTACTGTTAATGGTTCAAACAATTCTCTACCATGCGTCTCAAATAATCGTATAATGCTACAAGGAAATCCACAGCAAACACATAGCCCAGGAGCATTTAAAAATCAGCCTTCTGTTAGAGCGGCTTCTTTAAGTGCAGAACCTTTTGACATGGGCGTGTGTGGCTCTTCTAATTTGTTGGATTATAATCGGTGTAATGAAAACTGGCAGAGTGCAGCTCATTTGTCTAAATTTCCTGCCAATTCTTTGCCACTGTGTGATGCTTTTGGCAATGACCAACTGCCCCCCACTAGCATAAATGTTTCCAACTCAACTACTCATATCGGTAACAGTTCGGCTGATTTTTCTTCCAGAATGACAATTCCTGTTTCTTTGGACGATGCCAGAAATGAACTGCGGTGCCAAGAAGGCTTGATTGGGAATATTGTACAGCCTTCAAGCTATGCATCCCAACAAAGATGGGAAGAAAGGTTGGACTATAACCAAAGCATGAATCGTCCCTTCAACCCTGGGAACTCACATGCTTCTTCCAGTGGAGTGACAAGTTCCATGGGCCATGGTTTAAACCAGAATAATACAAATTGTAGCAATAGAATTGATGCATCTTTGGTTGGCAACCTGAATGGGGCAACCCCGTCAATCACCCGGTGCACTGAAATTGAGAAGATGTCTTCAGACATTCGACTGAAGTCAAATGAGGCCTACATTTTGGAGCAAATGAAGTCCCAAGATGGATTTATGCAGAACACTTTTAGTACCTTGGATGACCTAATGGGTGCAATGGTCAAAAGGGAGCAGAATGAGTTGACGTTGCTGGATGGAGAAATTGGATATGATGCCTACCCCGTTGGATCATGTAACTGA 2106 0.4387 MAVENQRGHLGNEDGGNDPFPVGMRVLAVDDDPICLKVLENLLRKCQYQVTTTNQAAEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTKLVMKGVTHGACDYLLKPVRMEELKNIWQHVIRRKNSDGKDQNKSSNEEKAPNIAGEGSQGLRSENSADQNKRLGKRRKDQSEDEEEDGEGNGDEEDPSAQKKPRVVWSVELHRKFVAAVNQLGLDKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKKAAQQANMVAALGGSDSYLRMGSIDGYGDFCTSSGTGRISNSTLPSYASSGIFSRLNSPAGLNMRGISSSALIRPVQSQNINSSLNTLGNIPPSMFPANQSSGLLQGIPTSIELNQSKQSNCATGISPLNQVDSSGFTVASSFPDSRATVNGSNNSLPCVSNNRIMLQGNPQQTHSPGAFKNQPSVRAASLSAEPFDMGVCGSSNLLDYNRCNENWQSAAHLSKFPANSLPLCDAFGNDQLPPTSINVSNSTTHIGNSSADFSSRMTIPVSLDDARNELRCQEGLIGNIVQPSSYASQQRWEERLDYNQSMNRPFNPGNSHASSSGVTSSMGHGLNQNNTNCSNRIDASLVGNLNGATPSITRCTEIEKMSSDIRLKSNEAYILEQMKSQDGFMQNTFSTLDDLMGAMVKREQNELTLLDGEIGYDAYPVGSCN 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00688 701 MobiDBLite consensus disorder prediction 579 605 - -
Cca09g00688 701 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 682 IPR045279 GO:0009736
Cca09g00688 701 Gene3D - 23 160 - -
Cca09g00688 701 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Cca09g00688 701 SMART REC_2 24 136 IPR001789 GO:0000160
Cca09g00688 701 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Cca09g00688 701 MobiDBLite consensus disorder prediction 177 192 - -
Cca09g00688 701 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Cca09g00688 701 MobiDBLite consensus disorder prediction 143 211 - -
Cca09g00688 701 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Cca09g00688 701 PIRSF RR_ARR_type-B 1 701 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cca09g00688 701 CDD REC_typeB_ARR-like 26 140 - -
Cca09g00688 701 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Cca09g00688 701 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 682 - -
Cca09g00688 701 SUPERFAMILY CheY-like 23 144 IPR011006 -
Cca09g00688 701 MobiDBLite consensus disorder prediction 156 176 - -
Cca09g00688 701 Gene3D - 207 269 - -
Cca09g00688 701 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00688 Cca-Chr9 19833774 19839180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00688 18 441 Response Regulator Gene Family AT2G25180 52.681 8.28e-127 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Cca09g00688 Response_reg 4e-26 CL0304