Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00684 ATGGCTTCTATCACATTTGAGGAACTCAAGAATGAAAATATAGATCTCGAAAAAATTCCCGTTGAAGAGGTCTTTGAAAAACTAAAATGTACGAGAGAGGGTCTAACATCCGCAGAAGGAGAGAAGAGGCTCCAAAGTTTTGGTCCCAACAAATTAGAAGAGAAAACGGAGAGCAAGTTCCTAAAGTTCTTGGGTTTTATGTGGAATCCATTATCATGGGTTATGGAGTCTGCAGCTATCATGGCCATTGTATTGGCTAACGGAGGGGGCAAGCCACCGGATTGGCAAGATTTCACTGGTATTGTGGTGCTGCTTATCATCAACTCAACCATCAGTTTCATTGAGGAAAACAATGCAGGCAATGCTGCTGCTGCTTTGATGGCTGGTCTTGCACCCAAATGCAAGGTGCTGAGGGATGGAAAATGGAGTGAGGAAGAAGCAGCAATTTTGGTACCAGGAGATATGATTAGCATCAAGTTGGGAGATATTGTCCCTGCTGATGCCCGTCTCTTGGAAGGAGATCCTCTCAAAATTGACCAATCTGCTCTTACTGGTGAGTCCTTGCCAGTCACAAGGAGCCCCGGTGAGGGAGTCTTCTCTGGTTCCACCTGCAAACAAGGTGAGATTGAGGCTGTTGTCATTGCCACTGGTATTAACACCTTCTTTGGCAAGGCTGCACACCTTGTAGACAGCACCAACAATGTTGGTCACTTCCAAATGGTGTTGACATCCATTGGTAACTTCTGTATCTGCTCCATTGCTGTGGGCATGGTGATTGAGCTCATTGTCATGTATCCCATCCAGCATAGGTCTTATAGGGATGGTATTGATAATTTGTTGGTGCTTCTCATTGGTGGTATCCCAATTGCCATGCCAACTGTTTTGTCTGTGACCATGGCTATTGGGTCTCATCGATTGTCCCAACAAGGAGCCATCACCAAGAGAATGACAGCCATTGAAGAAATGGCAGGGATGGATGTTCTCTGCAGTGACAAAACTGGAACTCTCACCCTTAATAAGCTTACTGTGGACAAGAACTTGATCGAGGTGTTCGCCCCCGGCGTGGACAAGGACACCCTTGTCTTATTCTCTGCCAGAGCTTCTAGGACCGAAAATCAGGATGCCATTGATACATCAATTGTGGGAATGTTAAGTGACCCAAAGGAGGCAAGAGCAGGAATCACCGAGGTGCATTTCTTGCCTTTTAATCCTGTGGACAAGCGCACAGCTATTACCTACATTGACAGCAATGGTGACTGGCACAGAAGCAGCAAAGGTGCTCCTGAGGAAATCATTGCACTTTGTAGCCTCAAGGGAGAGTCACTGAAAAAGGCTCACAAGGTCATTGATGAATTTGCTGACCGTGGTCTGCGTTCCTTGGGTGTTGCTCGCCAGACTGTTTCTGAAAAGACCAAGGAGAGTGCAGGAGAACCGTGGGAGTTCTTGGGTCTCTTACCCCTCTTTGACCCTCCAAGGCATGATAGTGCTGAGACTATTCGTCGTGCTCTTGACCTTGGTGTTAATGTTAAAATGATCACTGGTGACCAACTTGCCATTGGCAAAGAAACCGGTCGCAGGCTTGGAATGGGCACCAACATGTACCCTTCATCCTCCCTCCTTGGTGGTGAAAGCAAAGATGCTGCCATTGCATCAATGTCAATTGATGAACTCATTGAGAATGCTGATGGATTCGCCGGAGTCTTCCCTGAGCACAAGTACGAGATTGTGAAGAGGTTGCAGGATAGGAAGCACATTTGTGGAATGACCGGTGATGGTGTGAACGATGCACCAGCACTGAAGAAGGCAGACATTGGCATTGCAGTGGATGATGCAACCGACGCAGCAAGGAGTGCCTCTGACATTGTCTTGACCGAGCCAGGACTCAGTGTGATTGTGAGTGCAGTGTTGACAAGCAGGGCCATCTTCCAGAGGATGAAGAACTACACCATCTATGCCGTTTCCATCACAGTTCGTGTGGTTTTTGGGTTCTTGCTCGTTGCTCTCATCTGGAAGTTCGACTTCTCTCCCTTCATGGTTCTCATCATTGCCGTCTTGAACGATGGAACCATCATGACCATCTCAAAGGACAGGGTGAAGCCTTCTCCTTTGCCCGACTCATGGAAGCTTAAGGAAATCTTCGCCACTGGAGTTGTTCTTGGAGCATACATGGCCATCATGACCGCAGTCTTTTTCTACGTCGTTCATGACACTAATTTCTTCTCTAACACTTTTGGTGTCCACCCAATTGCAGAAAGTGAGGAGCAGCTTAACTCTGCTCTCTACCTTCAAGTGAGTATCATTAGTCAGGCACTCATTTTTGTGACTAGGTCCAGAGGCTGGTCATATTTTGAACGCCCAGGCACCATGCTCTGTGTTGCCTTCCTTTGTGCACAGTTGGTGGCCACTGTGATTGCTGTGTATGCACATTGGGACTTTGCAAAAATCAATGGCATTGGATGGGAATGGGCTGGGGTAATATGGATCTACAGCATCATTACCTATATCCCTCTTGACATCCTAAAGTTTTTAATACGCATGGGACTCACAGGCAGTGCATGCGGCAACTAG 2568 0.4716 MASITFEELKNENIDLEKIPVEEVFEKLKCTREGLTSAEGEKRLQSFGPNKLEEKTESKFLKFLGFMWNPLSWVMESAAIMAIVLANGGGKPPDWQDFTGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKCKVLRDGKWSEEEAAILVPGDMISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRSPGEGVFSGSTCKQGEIEAVVIATGINTFFGKAAHLVDSTNNVGHFQMVLTSIGNFCICSIAVGMVIELIVMYPIQHRSYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAPGVDKDTLVLFSARASRTENQDAIDTSIVGMLSDPKEARAGITEVHFLPFNPVDKRTAITYIDSNGDWHRSSKGAPEEIIALCSLKGESLKKAHKVIDEFADRGLRSLGVARQTVSEKTKESAGEPWEFLGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGGESKDAAIASMSIDELIENADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVDDATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITVRVVFGFLLVALIWKFDFSPFMVLIIAVLNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGAYMAIMTAVFFYVVHDTNFFSNTFGVHPIAESEEQLNSALYLQVSIISQALIFVTRSRGWSYFERPGTMLCVAFLCAQLVATVIAVYAHWDFAKINGIGWEWAGVIWIYSIITYIPLDILKFLIRMGLTGSACGN 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00684 855 PANTHER PLASMA MEMBRANE ATPASE 1 855 - -
Cca09g00684 855 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 101 347 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g00684 855 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 564 674 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g00684 855 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Cca09g00684 855 Pfam haloacid dehalogenase-like hydrolase 325 603 - -
Cca09g00684 855 Gene3D - 132 216 - -
Cca09g00684 855 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Cca09g00684 855 Gene3D - 326 626 IPR023214 -
Cca09g00684 855 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 846 IPR023298 -
Cca09g00684 855 Gene3D - 94 816 - -
Cca09g00684 855 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Cca09g00684 855 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Cca09g00684 855 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Cca09g00684 855 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Cca09g00684 855 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Cca09g00684 855 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Cca09g00684 855 SUPERFAMILY HAD-like 325 636 IPR036412 -
Cca09g00684 855 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g00684 855 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g00684 855 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g00684 855 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g00684 855 PRINTS H+-transporting ATPase (proton pump) signature 761 782 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca09g00684 855 SFLD p-type atpase 311 641 IPR044492 -
Cca09g00684 855 Gene3D - 341 488 IPR023299 GO:0000166
Cca09g00684 855 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Cca09g00684 855 Pfam Cation transporter/ATPase, N-terminus 18 81 IPR004014 -
Cca09g00684 855 CDD P-type_ATPase_H 34 842 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cca09g00684 855 Pfam E1-E2 ATPase 131 308 - -
Cca09g00684 855 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 34 807 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cca09g00684 855 SFLD C1.7: P-type atpase like 311 641 - -
Cca09g00684 855 PANTHER CALCIUM-TRANSPORTING ATPASE 1 855 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00684 Cca-Chr9 19738544 19754364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00684 2 855 Primary Pumps ATPases AT2G07560 82.787 0.0 1449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00684 K01535 - gmx:100798717 1498.41