Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00678 ATGGGTAGCATTGAATCTGAAAGAACAACAGTAGGATGGGCAGCAACAGACCCTTCAGGGATTCTCTCCCCATACACCTTCACTTTAAGAAACACAGGCCCTGATGATGTTTACATCAAAGTTCACTACTGTGGAATTTGCCATTCCGATCTCCACCAGATTAAGAACGATCTTGGCATGTCCAACTATCCCATGGTTCCTGGACATGAAGTGGTTGGCGAGGTACTCGAGGTGGGGCCTAACGTTAGCAGGTTCAAAGTGGGAGAAATTGTTGGGGTTGGACTCTTGGTAGGTTCCTGCAAAAACTGCAGGCCATGTCAATCAGACATTGAGCAATACTGCAACAAGAAGATCTGGTCTTACAACGATGTTTATATCGATGGAAAGCCCACCCAGGGTGGTTTTGCCGAAACCATGATCGTTGAGCAAAAGTTTGTGGTGAAAATACCAGAGGGTATGGAACCGGAGCAAGTGGCACCGTTGTTGTGTGCGGGTGTGACTGTGTACAGTCCGTTGGCACATTTTGGGCTGAGAGGAAGTGGGCTTAGGGGTGGAATATTGGGCCTTGGAGGAGTGGGGCACATGGGGGTGAAAATAGCAAAGGCACTTGGGCATCATGAAGCTGGTGATTCACTTGACTACATAATTGACACAGTGCCTGTGGGTCACCCTCTTGAGCCTTATCTCTCATTGCTAAAACTTGATGGCAAGTTGATCTTGATGGGGGTCATCAACACGCCTTTGCAATTCGTTAGCCCCATGGTTATGCTAGAGCTATTTCCTCAACTTTTGACAACATCCATGTTGGTGAGAACCCCATCACAAAGAAAGCAGGATCCGTTTTACCCAATATGGTATAGGCCTAAAGAAATTTGCGATTATCACTCCAGGGCAGCAGGGCACTCCATAGAGAACTACAAGGCCTTGAAGCTTCGCGTACGAGAGCTTATCGATGCTGGGTGGCTCAAGTTTGAGGGCCAATGCACCAACATCGATGAGTGGCCATGA 1008 0.4792 MGSIESERTTVGWAATDPSGILSPYTFTLRNTGPDDVYIKVHYCGICHSDLHQIKNDLGMSNYPMVPGHEVVGEVLEVGPNVSRFKVGEIVGVGLLVGSCKNCRPCQSDIEQYCNKKIWSYNDVYIDGKPTQGGFAETMIVEQKFVVKIPEGMEPEQVAPLLCAGVTVYSPLAHFGLRGSGLRGGILGLGGVGHMGVKIAKALGHHEAGDSLDYIIDTVPVGHPLEPYLSLLKLDGKLILMGVINTPLQFVSPMVMLELFPQLLTTSMLVRTPSQRKQDPFYPIWYRPKEICDYHSRAAGHSIENYKALKLRVRELIDAGWLKFEGQCTNIDEWP 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00678 335 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 154 256 IPR036291 -
Cca09g00678 335 SUPERFAMILY GroES-like 16 181 IPR011032 -
Cca09g00678 335 PANTHER ALDEHYDE REDUCTASE 207 258 - -
Cca09g00678 335 Gene3D - 164 206 - -
Cca09g00678 335 CDD CAD1 11 256 - -
Cca09g00678 335 Pfam Alcohol dehydrogenase GroES-like domain 34 149 IPR013154 -
Cca09g00678 335 Gene3D - 208 258 - -
Cca09g00678 335 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Cca09g00678 335 Gene3D - 13 163 - -
Cca09g00678 335 PANTHER ALDEHYDE REDUCTASE 4 206 - -
Cca09g00678 335 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 4 206 - -
Cca09g00678 335 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 207 258 - -
Cca09g00678 335 SMART PKS_ER_names_mod 20 303 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00678 Cca-Chr9 19383572 19387858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00678 1 257 Monolignol Biosynthesis Gene Families AT3G19450 70.103 1.71e-127 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00678 K00083 - gmx:100777558 425.246