Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00661 ATGGCGTTTCATGAGCATCTACCGCACGAAATCACGTTTCAGGCGTTCGCGGAGGAGCAGCAGTTAGGTCAGAGCAGGGACATGCAGCGGCTGTTGCCGCTCTCCGGCGGGGCGCCGACGTGGCTGAACGGCGGGAGCGTCCGGCAGCAGAATTTCCTCCACCTGCAGCCGGAGTCGGTGGGGGCGCAGCAAAACGACGACGTTCGGGGGGGCATGGATCGGAACCGGACGGAGAGCAACTCGGAAGCGGACGATTTGGCGGAATACAAAGCAGACATTCTGAGACACCCACTTTACGATCAGCTCCTTTCCGCTCACGTCTCCTGTTTGAGGATCGCCACCCCCGTTGACCAGCTTCCGAGGATCGACGCTCAGCTTCAGCAGTCGCAGCGCGTCGTTGACAAATACTCTGCACTCGGAAACGCCGTCGTTGATGACAAGGACCTTGATCAATTCATGACGCATTATGTTATACTACTCTGTGCTTTCAAAGAACAATTGCAACAACATGTTCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTCGAGCAATCGCTACAAAGCTTGACCGGTGTATCTCCCGGTGAAGGAACGGGTGCAACAATGTCCGATGATGAAGAAGACCAGGCTGAGAGTAATGCCAACTTATACGAAGGAAGCATGGATGGTGCTGATAGCCTCAGCTTTGGCCCTCTTGTTCCCACTGAGACCGAAAGATCCTTGATGGAGCGTGTGAGGCAGGAGTTGAAGCATGAGTTAAAACAGGGTTATAAGGACAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGAAGAGCGGGGAAGCTCCCAGGCGACACCACATCCCTTTTAAAAGCTTGGTGGCAGTCACATTCTAAATGGCCATATCCAACAGAAGAAGACAAGGCAAGGTTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGGAAAAGGAATTGGCATACTAATCCTTCTTCTTCTAGTGGCTCTAAAAGCAAACGCAAGAGTAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA 1083 0.5115 MAFHEHLPHEITFQAFAEEQQLGQSRDMQRLLPLSGGAPTWLNGGSVRQQNFLHLQPESVGAQQNDDVRGGMDRNRTESNSEADDLAEYKADILRHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSALGNAVVDDKDLDQFMTHYVILLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEEDQAESNANLYEGSMDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKSSGAGETSNQSFM 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00661 360 Pfam KNOX1 domain 89 130 IPR005540 GO:0003677|GO:0005634
Cca09g00661 360 SMART ELK_2 251 272 IPR005539 GO:0003677
Cca09g00661 360 Pfam Homeobox KN domain 291 330 IPR008422 GO:0003677|GO:0006355
Cca09g00661 360 MobiDBLite consensus disorder prediction 193 214 - -
Cca09g00661 360 Pfam ELK domain 251 272 IPR005539 GO:0003677
Cca09g00661 360 MobiDBLite consensus disorder prediction 69 83 - -
Cca09g00661 360 CDD homeodomain 274 335 IPR001356 GO:0003677
Cca09g00661 360 SMART KNOX2_2 139 194 IPR005541 GO:0003677|GO:0005634
Cca09g00661 360 SUPERFAMILY Homeodomain-like 273 337 IPR009057 -
Cca09g00661 360 MobiDBLite consensus disorder prediction 58 83 - -
Cca09g00661 360 ProSiteProfiles 'Homeobox' domain profile. 271 334 IPR001356 GO:0003677
Cca09g00661 360 MobiDBLite consensus disorder prediction 328 360 - -
Cca09g00661 360 Gene3D - 277 354 - -
Cca09g00661 360 Pfam KNOX2 domain 143 193 IPR005541 GO:0003677|GO:0005634
Cca09g00661 360 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 22 353 - -
Cca09g00661 360 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 22 353 - -
Cca09g00661 360 SMART KNOX1_2 87 131 IPR005540 GO:0003677|GO:0005634
Cca09g00661 360 SMART HOX_1 273 338 IPR001356 GO:0003677
Cca09g00661 360 ProSiteProfiles ELK domain profile. 251 271 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00661 Cca-Chr9 18987147 18993269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00661 70 347 Homeobox Transcription Factor Family AT5G25220 79.443 1.93e-165 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Cca09g00661 KNOX2 7.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00661 - - gmx:100816347 669.077