Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00657 ATGGCTGGAGTGCTTCCAGGAGTTGAATGTGCAAGAAAGAGACGCATTCATGGATGCTTAGATTCAAATTCAACTTCATTAGCTTCACATAATATATTCACAAGGCGCTCTTCTTTCTGTTTGTATGCAAGCAGCCATGAATCTCGTCTTTCTTCATCCTCCTCACTGCATAGAGGCACGTTATACCAGACACACCTAGATGAGAATATGGTAGGTGCAGCCAGAGAAGCCAGACAGAGATTGGATGACAAGTTCAGATCACAAAGGATGTCAGAAAACAAAAGCAGGCAAAACAGCACAAAGTGTGCGGAGGGAAGAGGAACAAGTGTAGCAGAGTTGCACACAGAGGTATATGGCACAAAGAAAAGTGGTTCAATGAAGTTCAGTTGGACCAAGTGGAGCATGAAGGCCTCAGAACAAGAGGATTGTGCAGTGTGCTTGGAATCATTCAGGGTTGGAGAGACACTAATTCATCTTCCTTGTGCTCATAGGTTCCATGACAGATGCTTGAAACCATGGTTGAAAAATAATTCTCATTGTCCATGTTGCAGAACCAACATTCTTTCTCTCTAG 573 0.4328 MAGVLPGVECARKRRIHGCLDSNSTSLASHNIFTRRSSFCLYASSHESRLSSSSSLHRGTLYQTHLDENMVGAAREARQRLDDKFRSQRMSENKSRQNSTKCAEGRGTSVAELHTEVYGTKKSGSMKFSWTKWSMKASEQEDCAVCLESFRVGETLIHLPCAHRFHDRCLKPWLKNNSHCPCCRTNILSL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00657 190 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 186 - -
Cca09g00657 190 CDD RING-H2_PA-TM-RING 142 184 - -
Cca09g00657 190 SMART ring_2 143 183 IPR001841 -
Cca09g00657 190 Pfam Ring finger domain 142 184 IPR001841 -
Cca09g00657 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 188 IPR013083 -
Cca09g00657 190 ProSiteProfiles Zinc finger RING-type profile. 143 184 IPR001841 -
Cca09g00657 190 MobiDBLite consensus disorder prediction 86 106 - -
Cca09g00657 190 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 186 - -
Cca09g00657 190 SUPERFAMILY RING/U-box 131 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00657 Cca-Chr9 18839733 18841595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00657 1 86 C3H Transcription Factor Family AT2G15580 44.211 5.00e-18 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00657 - - gmx:100527583 303.523