Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00656 ATGGCCGAACAGACTGAGAAGGCTTTTCTGAAGCAACCAAAAGTGTTTCTATGCTCTAAGAAAGGTGGAGGGAAAGAGGCCAGGGAAAGGGATGCCATTGAAGGAACTTATATTGATAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGGGGTCGTATCCTGGCTGGTACATGTCACAGTGCCAAAATGAATAGGACCATAATAGTTCGAAGGAACTATCTTCATTTTATTAAGAAATACCAGAGATATGAAAAGCGGCATTCAAATATTCCTGCACATATATCCCCTTGTTTCCGTGTTAAGGAAGGAGATCATGTAATTATTGGACAATGCAGGCCACTCTCGAAGACAGTGAGGTTCAATGTGTTGAAGGTGATCCCAGCTGGATCTTCAAGTGGTGCAAAGAAGGCATTTACTGGACTGTGA 429 0.4336 MAEQTEKAFLKQPKVFLCSKKGGGKEARERDAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGL 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00656 142 Pfam Ribosomal_S17 N-terminal 4 55 IPR032440 -
Cca09g00656 142 PANTHER BNAA06G38660D PROTEIN 30 141 - -
Cca09g00656 142 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 30 141 IPR000266 GO:0003735|GO:0005840|GO:0006412
Cca09g00656 142 SUPERFAMILY Nucleic acid-binding proteins 51 130 IPR012340 -
Cca09g00656 142 ProSitePatterns Ribosomal protein S17 signature. 104 116 IPR019979 GO:0003735|GO:0005840|GO:0006412
Cca09g00656 142 TIGRFAM uS17_arch: ribosomal protein uS17 39 126 IPR028333 -
Cca09g00656 142 Gene3D - 1 141 - -
Cca09g00656 142 PRINTS Ribosomal protein S17 family signature 71 94 IPR000266 GO:0003735|GO:0005840|GO:0006412
Cca09g00656 142 PRINTS Ribosomal protein S17 family signature 114 121 IPR000266 GO:0003735|GO:0005840|GO:0006412
Cca09g00656 142 PRINTS Ribosomal protein S17 family signature 104 114 IPR000266 GO:0003735|GO:0005840|GO:0006412
Cca09g00656 142 Pfam Ribosomal protein S17 57 125 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00656 Cca-Chr9 18780241 18781887 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00656 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 75.472 1.05e-82 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00656 K02949 - gmx:100500186 263.848