Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00655 ATGTGTGTGCAGGACGCAGAGCAAGATCATATGGATAACACCACAACCACTTCATGGCCTTTGCATTGCCACCTTTTGCTCACCACCCAGATGGACAAAAAAGGATCTTTGCTTAGAACTTCAAGTGATCACACCATCACCAATATCAGTGTTCAAAATTCCTTTCCTTTGGAAAGCATATGCGAGGACACGGTGGTTGCGGACAAGAAACAGAATCTGATGAATTTTGTTCCAGCTCTTCGGTCTGGAGAGTGGTCAGATATTGGAGAACGCCCTTACATGGAGGATACCCACATATGCATTGGAGATTTGGCAAAGAAGTTTAATTATGATGTACTTTCTGAGGAAGCCGTTTCCTTTTATGGTGTATTTGACGGACATGGAGGGAAGAGTGCTGCACAATTTGTCCGTGATAATCTGCCAAGAGTTATTGTTGAGGATGTTAAGTTTCCTTTGGAGCTTGAGAAGGTAGTCAAAAGGTCATTTTTGGAGACTGATGCTGCATTTCTGAAAACATCCTCTCATGAGCCTTCCCTTTCTTCTGGTACAACTGCATTAACTGCAATTATATTTGGAAGGACCTTACTTGTAGCCAATGCTGGAGATTGCCGTGCAGTGTTGTCCCGCCATGGAAGGGCTATAGAAATGTCAAAAGACCATAGACCAAACTGCAACAATGAAAGGATGCGGGTCGAGTCCCTAGGTGGCTTCATCGATGATGGTTATTTGAATGGCCAGTTAGCTGTTACTCGTGCACTTGGAGACTGGCACCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGAGGACCACTGAGTGCTGAACCTGAGCTTAAATTGATGACATTGACCAAAGAAGATGAATTCTTGGTAATTGCTAGTGATGGAATATGGGATGTTTTCAGTAGCCAAAATGCTGTGGATTTTGCTAGAAGGAGGCTTCAAGAGCACAATGATGAGAAACTATGCTGCAAGGAAATAGTTCAGGAAGCAATCAAGAGAGGATCAACAGATAACTTGACAGTTGTGATGGTATGTTTTAACTTAGATCCTCCACCACCTGTGGTTGTGGAAAGAACCCGAGTAAGAAGAAGTATATCTGCAGAGGGACTTCAAAATCTTAAATGCCTGCTAAAAGAATAA 1140 0.4281 MCVQDAEQDHMDNTTTTSWPLHCHLLLTTQMDKKGSLLRTSSDHTITNISVQNSFPLESICEDTVVADKKQNLMNFVPALRSGEWSDIGERPYMEDTHICIGDLAKKFNYDVLSEEAVSFYGVFDGHGGKSAAQFVRDNLPRVIVEDVKFPLELEKVVKRSFLETDAAFLKTSSHEPSLSSGTTALTAIIFGRTLLVANAGDCRAVLSRHGRAIEMSKDHRPNCNNERMRVESLGGFIDDGYLNGQLAVTRALGDWHLEGMKEMSERGGPLSAEPELKLMTLTKEDEFLVIASDGIWDVFSSQNAVDFARRRLQEHNDEKLCCKEIVQEAIKRGSTDNLTVVMVCFNLDPPPPVVVERTRVRRSISAEGLQNLKCLLKE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00655 379 PANTHER PROTEIN PHOSPHATASE 2C 1 367 IPR015655 GO:0004722|GO:0006470
Cca09g00655 379 SMART PP2C_4 71 344 IPR001932 -
Cca09g00655 379 Gene3D - 63 349 IPR036457 -
Cca09g00655 379 Pfam Protein phosphatase 2C 93 338 IPR001932 -
Cca09g00655 379 ProSiteProfiles PPM-type phosphatase domain profile. 81 346 IPR001932 -
Cca09g00655 379 SMART PP2C_SIG_2 96 346 IPR001932 -
Cca09g00655 379 CDD PP2Cc 81 346 IPR001932 -
Cca09g00655 379 ProSitePatterns PPM-type phosphatase domain signature. 120 128 IPR000222 GO:0043169
Cca09g00655 379 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 367 - -
Cca09g00655 379 SUPERFAMILY PP2C-like 73 347 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00655 Cca-Chr9 18720283 18724653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g00655 34 377 PP2C-type Phosphatase Gene Family AT2G25620 56.571 2.05e-134 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Cca09g00655 PP2C 7.5e-71 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00655 K14803 - gmx:100813157 687.182