LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca09g00639	ATGGAGTATGAAGAACAACAATATCCCCTTTCTCTTCAACAACTTCTTTTGAGAGACTCTAAACTTCGTAACACAGACTATGTATTTGGAGTTGTCATCTTCACTGGTCATGACACGAAGGTCATTCAAAATTCCACTGACCCCCCTTCAAAGAGAAGAAAGGTTGAGAAGAAGATGGATAGGGTTATCTACTTCATGTTTTGCATTTTGTTTCTAATGGAAGTTGTTGGATCTATTTTCTTTGGCTTTACAACTAAAGATGACTTGGACAATGGAGTGATGAAAAGGTGGTATTTAAGACCAGATGATTCTACAATTTTCTTTGATCCTAAAAGAGCACCTGCTGCTGCTATATATCATTGTTTGACAGCCTTAATGTTATATGGTTTCTTCATTCCCATCTCATTATATGTTTCAATAGAAATTGTCAAAGTCCTTCAGAGCATCTTCATCAATCAAGATATCCATATGTACTATGAAGATGCAGACAAACCAGCCCATGCCCGTACTTCAAACTTGAATGAGGAACTTGGCCAAGTTGACACAATACTTTTTGATAAAACTGGAACTCTGACCTGCAACTCGATGGAGTTCATCAAATGTTCCATTGCTGGGGTAGCTTATGGTCGTGGTGTTACGGAGGTTGAGAGGACAATGAGTAGAAAAAATGGTCCTGCTTTGATTGACAACCTAGGGGAATCTCCCGACCGAAATGTACCCATCAAAGGTTTTAACTTTACAGATGAAAGAATAATGAATGGAAAATGGGTTAATGAGACTAATGCAAATATTATCAGGAATTTTTTTCGCTTGTTGGCTATCTGCCATACAGCCATACCAGAAGTTGATGAAGAGACAAGAAATGTCTCATATGACACTGAATCTCCAGATGAATCAGCATTCGTAATTGCAGCAAGAGAAATTGGATTTGAATTCTATAAAAGGACTCAGACTAGTTTGTCAATGTATGAAATTGTTTCTTCAATTTTAGAAGCCATCTAA	1002	0.3733	MEYEEQQYPLSLQQLLLRDSKLRNTDYVFGVVIFTGHDTKVIQNSTDPPSKRRKVEKKMDRVIYFMFCILFLMEVVGSIFFGFTTKDDLDNGVMKRWYLRPDDSTIFFDPKRAPAAAIYHCLTALMLYGFFIPISLYVSIEIVKVLQSIFINQDIHMYYEDADKPAHARTSNLNEELGQVDTILFDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVERTMSRKNGPALIDNLGESPDRNVPIKGFNFTDERIMNGKWVNETNANIIRNFFRLLAICHTAIPEVDEETRNVSYDTESPDESAFVIAAREIGFEFYKRTQTSLSMYEIVSSILEAI	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca09g00639	333	SUPERFAMILY	Calcium ATPase, transmembrane domain M	47	266	IPR023298	-
	Cca09g00639	333	PANTHER	PHOSPHOLIPID-TRANSPORTING ATPASE	1	325	-	-
	Cca09g00639	333	Gene3D	-	229	331	IPR023299	GO:0000166
	Cca09g00639	333	SUPERFAMILY	HAD-like	172	213	IPR036412	-
	Cca09g00639	333	ProSitePatterns	E1-E2 ATPases phosphorylation site.	186	192	IPR018303	-
	Cca09g00639	333	PANTHER	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	1	325	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca09g00639	Cca-Chr9	18099494	18100495	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca09g00639	1	325	Primary Pumps ATPases	AT1G68710	71.343	4.38e-172	508

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca09g00639	K01530		-	gmx:100785037	564.303